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BaseInfo

ncRNA ID	novel_osa_miR3236
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:39991249-39991480 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2098560;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - CUCUUAUAUUAUAGGACGGAGGGA - 24
Stem-loop(if miRNA)	--         C                         U   AUACUA   A         C     U        UUAGAAUUAUUAUUUAUUUUCUUUG   CUUACUUUAUUAUCUAAAGUAAUU   CCUCCGUCC AUAAUAUAAGGGAUUUUGAGUUUUU CUU      UUU ACCACUUGU UUAUU AAAAAAUU                         UGA                        U   ||||||||| ||||||||||||||||||||||||| |||      ||| ||||||||| ||||| ||||||||                         |||                        A   GGAGGCAGG UAUUAUAUUCUCUAAAACUCAAAAA GAA      AAA UGGUGAGCA AAUAA UUUUUUAA                         CGU                        A AG         A                         C   GGUUAC   C         A     U        -----------------------CA   UUAUAUUUUUUGCUUUUCUAUACG
Stem-loop sequence	CCUCCGUCCCAUAAUAUAAGGGAUUUUGAGUUUUUUCUUAUACUAUUUAACCACUUGUCUUAUUUAAAAAAUUUUAGAAUUAUUAUUUAUUUUCUUUGUGACUUACUUUAUUAUCUAAAGUAAUUUAAGCAUAUCUUUUCGUUUUUUAUAUUUGCACAAUUUUUUUAAUAAAACGAGUGGUCAAACAUUGGAAGCAAAAACUCAAAAUCUCUUAUAUUAUAGGACGGAGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015773291.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   |||||||||||||||||||||||| targets:2113   UCCCUCCGUCCUAUAAUAUAAGAG   2136 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272202 (LOC9272202), mRNA	uncharacterized LOC9272202(LOC9272202)	coding protein	psRNATarget
AK288854.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   |||||||||||||||||||||||| targets:792   UCCCUCCGUCCUAUAAUAUAAGAG   815 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090075O17, full insert sequence	NA	coding protein	psRNATarget
XM_015778756.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   |||=||||||=||||||||||||| targets:1318   UCCUUCCGUCUUAUAAUAUAAGAG   1341 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL72 (LOC4335822), transcript variant X1, mRNA	RING-H2 finger protein ATL72(LOC4335822)	coding protein	psRNATarget
XM_015789761.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||||||||||||||||||||||=* targets:1262   UCCCUCCGUCCUAUAAUAUAAGGU   1285 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group AT-rich interactive domain-containing protein 1B (LOC4343202), transcript variant X1, mRNA	AT-rich interactive domain-containing protein 1B(LOC4343202)	coding protein	psRNATarget
XM_015789762.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||||||||||||||||||||||=* targets:1262   UCCCUCCGUCCUAUAAUAUAAGGU   1285 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group AT-rich interactive domain-containing protein 1B (LOC4343202), transcript variant X2, mRNA	AT-rich interactive domain-containing protein 1B(LOC4343202)	coding protein	psRNATarget
AK289112.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||||||||||||||||||||||=* targets:1275   UCCCUCCGUCCUAUAAUAUAAGGU   1298 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096P07, full insert sequence	NA	coding protein	psRNATarget
AK069433.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   |||||||||=|*|||||||||||| targets:269   UCCCUCCGUUCCAUAAUAUAAGAG   292 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023025M19, full insert sequence	NA	coding protein	psRNATarget
XM_015779114.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||=||||||||||*|||||||||| targets:579   UCUCUCCGUCCUACAAUAUAAGAG   602 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326202 (LOC4326202), mRNA	uncharacterized LOC4326202(LOC4326202)	coding protein	psRNATarget
AK107988.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||=||||||||||*|||||||||| targets:541   UCUCUCCGUCCUACAAUAUAAGAG   564 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-135-F03, full insert sequence	NA	coding protein	psRNATarget
CT831424.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||=||||||||||*|||||||||| targets:538   UCUCUCCGUCCUACAAUAUAAGAG   561 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038D01, full insert sequence	NA	coding protein	psRNATarget
AK063066.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   |||*|||||=|||||||||||||| targets:428   UCCAUCCGUUCUAUAAUAUAAGAG   451 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-110-G07, full insert sequence	NA	coding protein	psRNATarget
AK241276.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   |||||||||=||||||||*||||| targets:522   UCCCUCCGUUCUAUAAUACAAGAG   545 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065134N11, full insert sequence	NA	coding protein	psRNATarget
XM_015787746.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||*|||=|||||||||||||||=| targets:2212   UCACUCUGUCCUAUAAUAUAAGGG   2235 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC4340709), mRNA	protein ROOT PRIMORDIUM DEFECTIVE 1(LOC4340709)	coding protein	psRNATarget
AK120971.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||=||||||||||*|||||||||* targets:4668   UCUCUCCGUCCUAAAAUAUAAGAU   4691 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023041G06, full insert sequence	NA	coding protein	psRNATarget
XM_015789482.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   |||*|||||||||*|||||||||| targets:2858   UCCGUCCGUCCUAAAAUAUAAGAG   2881 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable galacturonosyltransferase 7 (LOC4344307), mRNA	probable galacturonosyltransferase 7(LOC4344307)	coding protein	psRNATarget
XM_015767620.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   |||*|||||||*|||||||||||| targets:1811   UCCAUCCGUCCCAUAAUAUAAGAG   1834 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324862 (LOC4324862), mRNA	uncharacterized LOC4324862(LOC4324862)	coding protein	psRNATarget
AK241555.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   |||*|||||||*|||||||||||| targets:111   UCCAUCCGUCCCAUAAUAUAAGAG   134 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065178B07, full insert sequence	NA	coding protein	psRNATarget
XM_015792986.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||*||||*||||||||||||||=| targets:2450   UCACUCCAUCCUAUAAUAUAAGGG   2473 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345461 (LOC4345461), transcript variant X3, mRNA	uncharacterized LOC4345461(LOC4345461)	coding protein	psRNATarget
XM_015792988.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||*||||*||||||||||||||=| targets:2424   UCACUCCAUCCUAUAAUAUAAGGG   2447 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345461 (LOC4345461), transcript variant X5, mRNA	uncharacterized LOC4345461(LOC4345461)	coding protein	psRNATarget
XM_015792984.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||*||||*||||||||||||||=| targets:2398   UCACUCCAUCCUAUAAUAUAAGGG   2421 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345461 (LOC4345461), transcript variant X1, mRNA	uncharacterized LOC4345461(LOC4345461)	coding protein	psRNATarget
XM_015792987.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||*||||*||||||||||||||=| targets:2372   UCACUCCAUCCUAUAAUAUAAGGG   2395 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345461 (LOC4345461), transcript variant X4, mRNA	uncharacterized LOC4345461(LOC4345461)	coding protein	psRNATarget
XM_015792985.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||*||||*||||||||||||||=| targets:2318   UCACUCCAUCCUAUAAUAUAAGGG   2341 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345461 (LOC4345461), transcript variant X2, mRNA	uncharacterized LOC4345461(LOC4345461)	coding protein	psRNATarget
XM_015792991.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||*||||*||||||||||||||=| targets:2226   UCACUCCAUCCUAUAAUAUAAGGG   2249 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345461 (LOC4345461), transcript variant X8, mRNA	uncharacterized LOC4345461(LOC4345461)	coding protein	psRNATarget
XM_015792990.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||*||||*||||||||||||||=| targets:2174   UCACUCCAUCCUAUAAUAUAAGGG   2197 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345461 (LOC4345461), transcript variant X7, mRNA	uncharacterized LOC4345461(LOC4345461)	coding protein	psRNATarget
XM_015792989.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||*||||*||||||||||||||=| targets:1895   UCACUCCAUCCUAUAAUAUAAGGG   1918 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345461 (LOC4345461), transcript variant X6, mRNA	uncharacterized LOC4345461(LOC4345461)	coding protein	psRNATarget
CT834084.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||*||||*||||||||||||||=| targets:1897   UCACUCCAUCCUAUAAUAUAAGGG   1920 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI242B03, full insert sequence	NA	coding protein	psRNATarget
AK120787.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   ||*||||*||||||||||||||=| targets:1841   UCACUCCAUCCUAUAAUAUAAGGG   1864 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023011G24, full insert sequence	NA	coding protein	psRNATarget
AK065301.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   |||*|||||||||*|||||||||* targets:2699   UCCAUCCGUCCUAGAAUAUAAGAA   2722 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013002N22, full insert sequence	NA	coding protein	psRNATarget
XM_015782255.1	ncRNA:24   AGGGAGGCAGGAUAUUAUAUUCUC   1   |*||||=||*|||||||||||||* targets:2289   UACCUCUGUGCUAUAAUAUAAGAA   2312 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pyruvate decarboxylase 1 (LOC4339066), mRNA	pyruvate decarboxylase 1(LOC4339066)	coding protein	psRNATarget