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BaseInfo

ncRNA ID	novel_osa_miR3234
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:18886929-18887032 [+]
Reference genome	IRGSP-1.0
Source	SRR2040386
Length	24
Mature sequence(if miRNA)	81 - AAAUAUGAGAAAUGUUAGAAUGAC - 104
Stem-loop(if miRNA)	--             UC  C         A                   GAU   CAUUCUAACAUUU  CA AUUUAUAUU GUGUUAGUGAAUCUAGAUA   A   |||||||||||||  || ||||||||| |||||||||||||||||||   GUAAGAUUGUAAA  GU UAAAUAUAA UAUAAUUAUUUAGAUUUGU   U CA             GA  A         C                   AUA
Stem-loop sequence	CAUUCUAACAUUUUCCACAUUUAUAUUAGUGUUAGUGAAUCUAGAUAGAUAUAUAUGUUUAGAUUUAUUAAUAUCAAUAUAAAUAUGAGAAAUGUUAGAAUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288502.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||=|||||||||||||| targets:565   GUCAUUCUAGCAUUUCUCAUAUUU   588 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence	NA	coding protein	psRNATarget
XM_015767720.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||=|||||||||||||| targets:566   GUCAUUCUAGCAUUUCUCAUAUUU   589 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330679 (LOC4330679), mRNA	uncharacterized LOC4330679(LOC4330679)	coding protein	psRNATarget
XM_015793334.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||||||||=|||||||* targets:1734   GUCAUUCUAACAUUUUUCAUAUUC   1757 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X1, mRNA	transcription factor bHLH112(LOC9271688)	coding protein	psRNATarget
XM_015793335.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||||||||=|||||||* targets:1716   GUCAUUCUAACAUUUUUCAUAUUC   1739 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X2, mRNA	transcription factor bHLH112(LOC9271688)	coding protein	psRNATarget
XM_015793336.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||||||||=|||||||* targets:1563   GUCAUUCUAACAUUUUUCAUAUUC   1586 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X3, mRNA	transcription factor bHLH112(LOC9271688)	coding protein	psRNATarget
XM_015761672.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   ||||||=||==||||||||||||| targets:5769   GUCAUUUUAGUAUUUCUCAUAUUU   5792 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X1, mRNA	regulatory-associated protein of TOR 2(LOC9266997)	coding protein	psRNATarget
XM_015761673.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   ||||||=||==||||||||||||| targets:5765   GUCAUUUUAGUAUUUCUCAUAUUU   5788 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X2, mRNA	regulatory-associated protein of TOR 2(LOC9266997)	coding protein	psRNATarget
XM_015795314.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   ||||||||==|||||||||||||* targets:1742   GUCAUUCUGGCAUUUCUCAUAUUC   1765 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group cytochrome P450 89A2 (LOC4344671), mRNA	cytochrome P450 89A2(LOC4344671)	coding protein	psRNATarget
CT833789.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||==||||||||||||* targets:366   GUCAUUCUAGUAUUUCUCAUAUUC   389 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN032F14, full insert sequence	NA	coding protein	psRNATarget
CT833788.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||==||||||||||||* targets:367   GUCAUUCUAGUAUUUCUCAUAUUC   390 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058L20, full insert sequence	NA	coding protein	psRNATarget
AK288390.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||=|||||||||*|||| targets:680   GUCAUUCUAGCAUUUCUCACAUUU   703 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence	NA	coding protein	psRNATarget
XM_015766661.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||*|||||||||||||* targets:5120   GUCAUUCUAUCAUUUCUCAUAUUC   5143 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X3, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766659.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||*|||||||||||||* targets:5087   GUCAUUCUAUCAUUUCUCAUAUUC   5110 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X1, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766663.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||*|||||||||||||* targets:4999   GUCAUUCUAUCAUUUCUCAUAUUC   5022 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X5, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766660.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||*|||||||||||||* targets:4459   GUCAUUCUAUCAUUUCUCAUAUUC   4482 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X2, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766662.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||*|||||||||||||* targets:4427   GUCAUUCUAUCAUUUCUCAUAUUC   4450 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X4, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766665.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||*|||||||||||||* targets:4170   GUCAUUCUAUCAUUUCUCAUAUUC   4193 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X7, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766664.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||*|||||||||||||* targets:3750   GUCAUUCUAUCAUUUCUCAUAUUC   3773 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X6, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015790773.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||*|||||||||||||* targets:1225   GUCAUUCUAUCAUUUCUCAUAUUC   1248 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group peroxidase 1-like (LOC107275918), mRNA	peroxidase 1-like(LOC107275918)	coding protein	psRNATarget
AK288266.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |*|||||||=|||||||||||||* targets:1541   GCCAUUCUAGCAUUUCUCAUAUUC   1564 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090016H18, full insert sequence	NA	coding protein	psRNATarget
XM_015764968.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |||||||||*|||||||||*|||| targets:1146   GUCAUUCUAUCAUUUCUCACAUUU   1169 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269766 (LOC9269766), mRNA	uncharacterized LOC9269766(LOC9269766)	coding protein	psRNATarget
XM_015759228.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   ||*|||*||||||||||||*|||| targets:2088   GUAAUUGUAACAUUUCUCACAUUU   2111 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group MLO-like protein 9 (LOC4349258), mRNA	MLO-like protein 9(LOC4349258)	coding protein	psRNATarget
AK072272.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   ||*|||*||||||||||||*|||| targets:1828   GUAAUUGUAACAUUUCUCACAUUU   1851 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023004C21, full insert sequence	NA	coding protein	psRNATarget
CT831361.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |*|*|||||=||||*||||||||| targets:1959   GACUUUCUAGCAUUGCUCAUAUUU   1982 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI207J06, full insert sequence	NA	coding protein	psRNATarget
XM_015763482.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |*|*|||||=||||*||||||||| targets:1630   GACUUUCUAGCAUUGCUCAUAUUU   1653 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352431 (LOC4352431), mRNA	uncharacterized LOC4352431(LOC4352431)	coding protein	psRNATarget
AK108630.1	ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAA   1   |*|*|||||=||||*||||||||| targets:1596   GACUUUCUAGCAUUGCUCAUAUUU   1619 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-147-F01, full insert sequence	NA	coding protein	psRNATarget