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BaseInfo

ncRNA ID	novel_osa_miR3233
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:5817009-5817100 [-]
Reference genome	IRGSP-1.0
Source	SRR2040386;SRR1612403
Length	24
Mature sequence(if miRNA)	1 - AUCUAUAUGUAUGUGGACAAUGCU - 24
Stem-loop(if miRNA)	--            U   UA                         U   CAUUGUCCACAU CAU  AGAUGUUAAUGAAUCUAGACAUAUG A   |||||||||||| |||  |||||||||||||||||||||||||   GUAACAGGUGUA GUA  UCUACAAUUACUUAGAUUUGUGUAC U UC            U   UA                         G
Stem-loop sequence	CAUUGUCCACAUUCAUUAAGAUGUUAAUGAAUCUAGACAUAUGUAUGCAUGUGUUUAGAUUCAUUAACAUCUAUAUGUAUGUGGACAAUGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK073522.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   ||||||||||||||*||||||||| targets:2496   AGCAUUGUCCACAUUCAUAUAGAU   2519 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033046G09, full insert sequence	NA	coding protein	psRNATarget
XM_015767218.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   ||||||||||||||*||||||||| targets:3707   AGCAUUGUCCACAUUCAUAUAGAU   3730 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X7, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767215.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   ||||||||||||||*||||||||| targets:3803   AGCAUUGUCCACAUUCAUAUAGAU   3826 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X4, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767217.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   ||||||||||||||*||||||||| targets:3862   AGCAUUGUCCACAUUCAUAUAGAU   3885 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X6, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767212.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   ||||||||||||||*||||||||| targets:3929   AGCAUUGUCCACAUUCAUAUAGAU   3952 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767214.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   ||||||||||||||*||||||||| targets:3958   AGCAUUGUCCACAUUCAUAUAGAU   3981 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X3, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767211.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   ||||||||||||||*||||||||| targets:4025   AGCAUUGUCCACAUUCAUAUAGAU   4048 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
AK288568.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   ||||||||||||||*||||||||| targets:1391   AGCAUUGUCCACAUCCAUAUAGAU   1414 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090048B06, full insert sequence	NA	coding protein	psRNATarget
AK072517.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   |||||||*||=||||||||||||| targets:1332   AGCAUUGCCCGCAUACAUAUAGAU   1355 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023133J02, full insert sequence	NA	coding protein	psRNATarget
XM_015757225.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   |||||||*||||||*||||||||| targets:2296   AGCAUUGCCCACAUUCAUAUAGAU   2319 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g08610 (LOC4348896), mRNA	pentatricopeptide repeat-containing protein At1g08610(LOC4348896)	coding protein	psRNATarget
XM_015766247.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   |||||||*||||||*||||||||| targets:2504   AGCAUUGCCCACAUUCAUAUAGAU   2527 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107277300), mRNA	putative receptor protein kinase ZmPK1(LOC107277300)	coding protein	psRNATarget
AK103437.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   |||||||*||||||*||||||||| targets:2368   AGCAUUGCCCACAUUCAUAUAGAU   2391 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033129C05, full insert sequence	NA	coding protein	psRNATarget
XM_015755177.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   |*||||||||||||*||||||||| targets:1760   ACCAUUGUCCACAUUCAUAUAGAU   1783 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4346703), transcript variant X1, mRNA	glutathione S-transferase T3(LOC4346703)	coding protein	psRNATarget
XM_015792862.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   ||=||||*|||||||*|||||||| targets:860   AGUAUUGGCCACAUAAAUAUAGAU   883 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc finger protein 593 (LOC4346346), mRNA	zinc finger protein 593(LOC4346346)	coding protein	psRNATarget
AK243435.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   |*=|||||||||||*||||||||| targets:1713   AAUAUUGUCCACAUUCAUAUAGAU   1736 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J100068A12, full insert sequence	NA	coding protein	psRNATarget
XM_015755175.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   |*=|||||||||||*||||||||| targets:1723   AAUAUUGUCCACAUUCAUAUAGAU   1746 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 76M5-like (LOC4347207), mRNA	cytochrome P450 76M5-like(LOC4347207)	coding protein	psRNATarget
AK070622.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   |*=|*|||||||||*||||||||| targets:1944   AAUACUGUCCACAUUCAUAUAGAU   1967 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023059G14, full insert sequence	NA	coding protein	psRNATarget
XM_015761840.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   |*=|*|||||||||*||||||||| targets:1984   AAUACUGUCCACAUUCAUAUAGAU   2007 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350579 (LOC4350579), mRNA	uncharacterized LOC4350579(LOC4350579)	coding protein	psRNATarget
AK067660.1	ncRNA:24   UCGUAACAGGUGUAUGUAUAUCUA   1   |*=||||*||||||||||*||||| targets:2716   AAUAUUGCCCACAUACAUUUAGAU   2739 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013116C06, full insert sequence	NA	coding protein	psRNATarget