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BaseInfo

ncRNA ID novel_osa_miR3229
Species Oryza sativa
Class miRNA
Genome position Chr8:23376714-23376874 [-]
Reference genome IRGSP-1.0
Source SRR2040386;SRR2040388
Length 24
Mature sequence(if miRNA) 1 - ACUCGAAACAGUUUGACUUUGACC - 24
Stem-loop(if miRNA) --     A       AC  UA     G              A   A A          UCAACCCAACA          A
  UCAAA UUAAAUU  UU  AGUUU ACUAGAUUUAUAGA AAA A AGUAAUAUUU           UAAAUAUAUU U
  ||||| |||||||  ||  ||||| |||||||||||||| ||| | ||||||||||           |||||||||| A
  AGUUU AGUUUGA  AA  UCAAA UGAUUUAAAUAUCU UUU U UUAUUAUAAA           AUUUAUAUAA A
CC     C       CA  GC     A              A   A A          UAUUAUGAUUA          A
Stem-loop sequence UCAAAAUUAAAUUACUUUAAGUUUGACUAGAUUUAUAGAAAAAAAAAGUAAUAUUUUCAACCCAACAUAAAUAUAUUAUAAAAAUAUAUUUAAUUAGUAUUAUAAAUAUUAUUAUAUUUAUCUAUAAAUUUAGUAAAACUCGAAACAGUUUGACUUUGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK241906.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGCUCA   1
  |||||||*||||||||||||*|||
targets:942   GGUCAAAUUCAAACUGUUUCAAGU   965

2.5 Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence NA coding protein psRNATarget
AK242901.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGCUCA   1
  ||||||||*|||||||||||*|||
targets:1272   GGUCAAAGACAAACUGUUUCAAGU   1295

2.5 Oryza sativa Japonica Group cDNA, clone: J090081L24, full insert sequence NA coding protein psRNATarget
XM_015788305.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGCUCA   1
  ||||||||*|||||||||||*|||
targets:1322   GGUCAAAGACAAACUGUUUCAAGU   1345

2.5 PREDICTED: Oryza sativa Japonica Group F-box/FBD/LRR-repeat protein At1g13570 (LOC4340210), transcript variant X1, mRNA F-box/FBD/LRR-repeat protein At1g13570(LOC4340210) coding protein psRNATarget
AK288358.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGCUCA   1
  |*||||||||||||||||||*|||
targets:899   GCUCAAAGUCAAACUGUUUCAAGU   922

1.5 Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence NA coding protein psRNATarget
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