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BaseInfo

ncRNA ID novel_osa_miR3228
Species Oryza sativa
Class miRNA
Genome position Chr8:24176995-24177205 [-]
Reference genome IRGSP-1.0
Source SRR2040386;SRR2040389;SRR2040401;SRR2040403
Length 24
Mature sequence(if miRNA) 188 - UAUGUGGCAUUAGAAUUAAAAAAA - 211
Stem-loop(if miRNA) --                             U                                                       ----------    CCCACAUGUC
  UAUGUGGCAUUAGAAUUAAAAAAAUAUUU GUGGGACCCAUCUGUCAUUCACACACAAAAUAUAUUGUGGGACCCACCGACAUGU          GGGG          A
  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||
  AUACACCGUAAUCUUAAUUUUUUUAUAGA UACCCUGGGUAGACAGUAAGUGUGUGUUUUAUAUAACACCCUGGGUGGCUGUGUA          UCCC          U
GA                             -                                                       AUCUUUUCUC    UCCUCCUUCC
Stem-loop sequence UAUGUGGCAUUAGAAUUAAAAAAAUAUUUUGUGGGACCCAUCUGUCAUUCACACACAAAAUAUAUUGUGGGACCCACCGACAUGUGGGGCCCACAUGUCAUCCUUCCUCCUCCCUCUCUUUUCUAAUGUGUCGGUGGGUCCCACAAUAUAUUUUGUGUGUGAAUGACAGAUGGGUCCCAUAGAUAUUUUUUUAAUUCUAAUGCCACAUAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015767270.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||||||||||||||||||
targets:1241   UUUUUUUAAUUCUAAUGCCACAUA   1264

0.0 PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3-like (LOC107279894), mRNA S-type anion channel SLAH3-like(LOC107279894) coding protein psRNATarget
XM_015784869.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *||||||||||||||||||||=||
targets:4   GUUUUUUAAUUCUAAUGCCACGUA   27

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X12, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784869.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||*|||||||*|||||||
targets:1425   UUUUUUUAUUUCUAAUACCACAUA   1448

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X12, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784857.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *||||||||||||||||||||=||
targets:4   GUUUUUUAAUUCUAAUGCCACGUA   27

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X1, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784857.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||*|||||||*|||||||
targets:1425   UUUUUUUAUUUCUAAUACCACAUA   1448

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X1, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784864.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *||||||||||||||||||||=||
targets:4   GUUUUUUAAUUCUAAUGCCACGUA   27

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X7, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784864.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||*|||||||*|||||||
targets:1425   UUUUUUUAUUUCUAAUACCACAUA   1448

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X7, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784858.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *||||||||||||||||||||=||
targets:4   GUUUUUUAAUUCUAAUGCCACGUA   27

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X2, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784858.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||*|||||||*|||||||
targets:1425   UUUUUUUAUUUCUAAUACCACAUA   1448

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X2, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784860.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *||||||||||||||||||||=||
targets:4   GUUUUUUAAUUCUAAUGCCACGUA   27

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X4, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784860.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||*|||||||*|||||||
targets:1425   UUUUUUUAUUUCUAAUACCACAUA   1448

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X4, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784861.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *||||||||||||||||||||=||
targets:4   GUUUUUUAAUUCUAAUGCCACGUA   27

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X5, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784861.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||*|||||||*|||||||
targets:1425   UUUUUUUAUUUCUAAUACCACAUA   1448

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X5, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784866.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *||||||||||||||||||||=||
targets:4   GUUUUUUAAUUCUAAUGCCACGUA   27

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X9, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784866.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||*|||||||*|||||||
targets:1425   UUUUUUUAUUUCUAAUACCACAUA   1448

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X9, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784868.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *||||||||||||||||||||=||
targets:4   GUUUUUUAAUUCUAAUGCCACGUA   27

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X11, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784868.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||*|||||||*|||||||
targets:1425   UUUUUUUAUUUCUAAUACCACAUA   1448

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X11, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784863.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *||||||||||||||||||||=||
targets:4   GUUUUUUAAUUCUAAUGCCACGUA   27

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X6, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784863.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||*|||||||*|||||||
targets:1425   UUUUUUUAUUUCUAAUACCACAUA   1448

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X6, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784859.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *||||||||||||||||||||=||
targets:4   GUUUUUUAAUUCUAAUGCCACGUA   27

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X3, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784859.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||*|||||||*|||||||
targets:1425   UUUUUUUAUUUCUAAUACCACAUA   1448

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X3, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784867.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *||||||||||||||||||||=||
targets:4   GUUUUUUAAUUCUAAUGCCACGUA   27

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X10, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784867.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||*|||||||*|||||||
targets:1425   UUUUUUUAUUUCUAAUACCACAUA   1448

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X10, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784865.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *||||||||||||||||||||=||
targets:4   GUUUUUUAAUUCUAAUGCCACGUA   27

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X8, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015784865.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||*|||||||*|||||||
targets:1425   UUUUUUUAUUUCUAAUACCACAUA   1448

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized acetyltransferase At3g50280 (LOC9266801), transcript variant X8, mRNA uncharacterized acetyltransferase At3g50280(Os05g0449100) coding protein psRNATarget
XM_015765184.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *||||||||||||||||||||=||
targets:1370   AUUUUUUAAUUCUAAUGCCACGUA   1393

1.5 PREDICTED: Oryza sativa Japonica Group mini-chromosome maintenance complex-binding protein (LOC4327146), mRNA mini-chromosome maintenance complex-binding protein(LOC4327146) coding protein psRNATarget
XM_015791319.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  |*||||||||||||||||||||||
targets:1000   UAUUUUUAAUUCUAAUGCCACAUA   1023

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342779 (LOC4342779), transcript variant X1, mRNA uncharacterized LOC4342779(Os07g0232000) coding protein psRNATarget
XM_015791320.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  |*||||||||||||||||||||||
targets:1000   UAUUUUUAAUUCUAAUGCCACAUA   1023

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342779 (LOC4342779), transcript variant X2, mRNA uncharacterized LOC4342779(Os07g0232000) coding protein psRNATarget
AK069167.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  |||||||||||||||||||||*||
targets:823   UUUUUUUAAUUCUAAUGCCACUUA   846

1.5 Oryza sativa Japonica Group cDNA clone:J023009D19, full insert sequence NA coding protein psRNATarget
AK288635.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  ||||||||||||||||*|||||||
targets:628   UUUUUUUAAUUCUAAUACCACAUA   651

1.5 Oryza sativa Japonica Group cDNA, clone: J090055J05, full insert sequence NA coding protein psRNATarget
XM_015783543.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  |||||||||*|||||||||||=||
targets:295   UUUUUUUAACUCUAAUGCCACGUA   318

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339505 (LOC4339505), transcript variant X1, mRNA uncharacterized LOC4339505(LOC4339505) coding protein psRNATarget
XM_015783544.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  |||||||||*|||||||||||=||
targets:289   UUUUUUUAACUCUAAUGCCACGUA   312

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339505 (LOC4339505), transcript variant X2, mRNA uncharacterized LOC4339505(LOC4339505) coding protein psRNATarget
XM_015795533.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *|||||||||||||*|||||||||
targets:93   AUUUUUUAAUUCUACUGCCACAUA   116

1.5 PREDICTED: Oryza sativa Japonica Group DNA polymerase zeta processivity subunit (LOC4346177), transcript variant X1, mRNA DNA polymerase zeta processivity subunit(LOC4346177) coding protein psRNATarget
XM_015795534.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  *|||||||||||||*|||||||||
targets:93   AUUUUUUAAUUCUACUGCCACAUA   116

1.5 PREDICTED: Oryza sativa Japonica Group DNA polymerase zeta processivity subunit (LOC4346177), transcript variant X2, mRNA DNA polymerase zeta processivity subunit(LOC4346177) coding protein psRNATarget
XM_015771970.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  |*|||||||||||||||||||*||
targets:3565   UAUUUUUAAUUCUAAUGCCACUUA   3588

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329708 (LOC4329708), mRNA uncharacterized LOC4329708(LOC4329708) coding protein psRNATarget
AK073899.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  |*|||||||||||||||||||*||
targets:2396   UAUUUUUAAUUCUAAUGCCACUUA   2419

1.5 Oryza sativa Japonica Group cDNA clone:J033072H18, full insert sequence NA coding protein psRNATarget
AK066077.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  |*|||||||||||||||||||*||
targets:2687   UAUUUUUAAUUCUAAUGCCACUUA   2710

1.5 Oryza sativa Japonica Group cDNA clone:J013051F05, full insert sequence NA coding protein psRNATarget
XM_015773939.1
ncRNA:24   AAAAAAAUUAAGAUUACGGUGUAU   1
  |*|||||||||*||||||||||||
targets:1765   UAUUUUUAAUUGUAAUGCCACAUA   1788

1.5 PREDICTED: Oryza sativa Japonica Group probable isoaspartyl peptidase/L-asparaginase 2 (LOC107280261), mRNA probable isoaspartyl peptidase/L-asparaginase 2(LOC107280261) coding protein psRNATarget
AK108157.1
ncRNA:24   AAA-AAAAUUAAGAUUACGGUGUAU   1
  |||-||||*|||||||||||||=||
targets:921   UUUGUUUUUAUUCUAAUGCCACGUA   945

2.5 Oryza sativa Japonica Group cDNA clone:002-139-G08, full insert sequence NA coding protein psRNATarget
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