Search result

BaseInfo

ncRNA ID novel_osa_miR3226
Species Oryza sativa
Class miRNA
Genome position Chr8:27189069-27189160 [+]
Reference genome IRGSP-1.0
Source SRR2040386
Length 24
Mature sequence(if miRNA) 1 - GAGACGAAUAUAACGAGGUAUACU - 24
Stem-loop(if miRNA) --         A            C   C C   U  A  GGAUGA
  GAGACGAAU UAACGAGGUAUA UAA C AUG UU GC      U
  ||||||||| |||||||||||| ||| | ||| || ||
  CUCUGCUUA AUUGUUCUAUAU AUU G UAC AA CG      U
CA         G            A   A A   U  A  AUGUUA
Stem-loop sequence GAGACGAAUAUAACGAGGUAUACUAACCCAUGUUUAGCGGAUGAUUAUUGUAGCAAAUCAUAGAUUAAUAUAUCUUGUUAGAUUCGUCUCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015781418.1
ncRNA:24   UCAUAUGGAGCAAUAUAAGCAGAG   1
  |*||||||||||||*|||||||||
targets:1256   AAUAUACCUCGUUAGAUUCGUCUC   1279

1.5 PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1 (LOC4335446), mRNA serine/arginine repetitive matrix protein 1(LOC4335446) coding protein psRNATarget
AK107263.1
ncRNA:24   UCAUAUGGAGCAAUAUAAGCAGAG   1
  |*||||||||||||*|||||||||
targets:1167   AAUAUACCUCGUUAGAUUCGUCUC   1190

1.5 Oryza sativa Japonica Group cDNA clone:002-125-H03, full insert sequence NA coding protein psRNATarget