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BaseInfo

ncRNA ID	novel_osa_miR3222
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:40138898-40139122 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	202 - ACAUGGAGCAUUAAAUGUGGACGA - 225
Stem-loop(if miRNA)	--   --     C             ---G  -      C     CACAG  UA AUA                   U           CACGCCAUG   UGAU     GA   U   ACA  UGGAG AUUAAAUGUGGAC    AA AAAAAA AAUUG     UU  C   UAAAUUGCGAGACGAAUCU UUGAGCCUAAU         AUU    AAUGU  UGC A   |||  ||||| |||||||||||||    || |||||| |||||     ||  |   ||||||||||||||||||| |||||||||||         |||    |||||  |||   UGU  ACUUC UAAUUUGCAUCUG    UU UUUUUU UUAAU     AG  G   AUUUGACGCUCUGUUUAGA AAUUCGGAUUA         UAG    UUACA  AUG U UG   AA     A             AUUA  A      U     AUUUA  GC GAC                   C           AUUAGACAA   UCGU     -A   A
Stem-loop sequence	ACAUGGAGCAUUAAAUGUGGACGAAAAAAAACAAUUGCACAGUUUACAUAUAAAUUGCGAGACGAAUCUUUUGAGCCUAAUCACGCCAUGAUUUGAUAAUGUGAUGCUAUAGUAAACAUUUGCUGAUAACAGAUUAAUUAGGCUUAACAGAUUUGUCUCGCAGUUUACAGGCGGAAUUUAUAAUUUUUUUUUAUUAUUAGUCUACGUUUAAUACUUCAAAUGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK103318.1	ncRNA:24   AGCAGGUGUAAAUUACGAGGUACA   1   |||||||=|||||||||||||||* targets:1212   UCGUCCAUAUUUAAUGCUCCAUGC   1235 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence	NA	coding protein	psRNATarget
XM_015775081.1	ncRNA:24   AGCAGGUGUAAAUUACGAGGUACA   1   *||||||||||||||||||||||* targets:1173   CCGUCCACAUUUAAUGCUCCAUGC   1196 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group methylesterase 3 (LOC4324570), mRNA	methylesterase 3(LOC4324570)	coding protein	psRNATarget
AK120234.1	ncRNA:24   AGCAGGUGUAAAUUACGAGGUACA   1   ||||=||||||||||||||=|||* targets:2562   UCGUUCACAUUUAAUGCUCUAUGC   2585 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence	NA	coding protein	psRNATarget
AK102878.1	ncRNA:24   AGCAGGUGUAAAUUACGAGGUACA   1   |||||||=||||||||||||||*| targets:2186   UCGUCCAUAUUUAAUGCUCCAUAU   2209 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033112G02, full insert sequence	NA	coding protein	psRNATarget
XM_015785585.1	ncRNA:24   AGCAGGUGUAAAUUACGAGGUACA   1   |||||||=||||||||||||||*| targets:2257   UCGUCCAUAUUUAAUGCUCCAUAU   2280 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X2, mRNA	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876)	coding protein	psRNATarget
XM_015785584.1	ncRNA:24   AGCAGGUGUAAAUUACGAGGUACA   1   |||||||=||||||||||||||*| targets:2390   UCGUCCAUAUUUAAUGCUCCAUAU   2413 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X1, mRNA	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876)	coding protein	psRNATarget
AK065982.1	ncRNA:24   AGCAGGUGUAAAUUACGAGGUACA   1   |*|||||||||||||||||||||* targets:2931   UGGUCCACAUUUAAUGCUCCAUGC   2954 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013045J05, full insert sequence	NA	coding protein	psRNATarget
AK288948.1	ncRNA:24   AGCAGGUGUAAAUUACGAGGUACA   1   ||*||||=||||||||||=||||| targets:582   UCAUCCAUAUUUAAUGCUUCAUGU   605 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
AK288279.1	ncRNA:24   AG-CAGGUGUAAAUUACGAGGUACA   1   ||-||||||||||||||||||||** targets:5751   UCUGUCCACAUUUAAUGCUCCAUAC   5775 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090017N13, full insert sequence	NA	coding protein	psRNATarget
XM_015769710.1	ncRNA:24   AGCAGGUGUAAAUUACGAGGUACA   1   ||--|||||||||||||*|||||* targets:2993   UC--CCACAUUUAAUGCCCCAUGC   3014 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X2, mRNA	disease resistance protein RPP13(LOC4328990)	coding protein	psRNATarget
XM_015769709.1	ncRNA:24   AGCAGGUGUAAAUUACGAGGUACA   1   ||--|||||||||||||*|||||* targets:3127   UC--CCACAUUUAAUGCCCCAUGC   3148 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X1, mRNA	disease resistance protein RPP13(LOC4328990)	coding protein	psRNATarget