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BaseInfo

ncRNA ID	novel_osa_miR3220
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:6629254-6629418 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR4407962;SRR1556020
Length	24
Mature sequence(if miRNA)	142 - AGACGAUUAAAGUUGGGCGCGGAA - 165
Stem-loop(if miRNA)	--A                    C              A     AU  --UUAGUAUUUUUGUU        AUGA    A   A    UGCGCCCAACUUUGAUCGUC GUUUUAUUUGAGAA UUUUU  AA                GUUAUGAG    UAAA UAU A    |||||||||||||||||||| |||||||||||||| |||||  ||                ||||||||    |||| ||| A    GCGCGGGUUGAAAUUAGCAG CAGAAUAAACUUUU AAAAA  UU                CAGUACUC    AUUU AUG U AAG                    A              A     CU  UUUAAAUUUUUGUAUU        ----    C   A
Stem-loop sequence	AUGCGCCCAACUUUGAUCGUCCGUUUUAUUUGAGAAAUUUUUAUAAUUAGUAUUUUUGUUGUUAUGAGAUGAUAAAAUAUAAAUAGUACUUUACUCAUGACUUAUGUUUUUAAAUUUUUUCAAAAAAUUUUCAAAUAAGACAGACGAUUAAAGUUGGGCGCGGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015780430.1	ncRNA:24   AAGGCGCGGGUUGAAAUUAGCAGA   1   |||||||=|=|||||||||||||| targets:408   UUCCGCGUCUAACUUUAAUCGUCU   431 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group E3 ubiquitin ligase BIG BROTHER-related-like (LOC107276627), transcript variant X1, mRNA	E3 ubiquitin ligase BIG BROTHER-related-like(LOC107276627)	coding protein	psRNATarget
XM_015780431.1	ncRNA:24   AAGGCGCGGGUUGAAAUUAGCAGA   1   |||||||=|=|||||||||||||| targets:408   UUCCGCGUCUAACUUUAAUCGUCU   431 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group E3 ubiquitin ligase BIG BROTHER-related-like (LOC107276627), transcript variant X2, mRNA	E3 ubiquitin ligase BIG BROTHER-related-like(LOC107276627)	coding protein	psRNATarget
AK070816.1	ncRNA:24   AAGGCGCGGGUUGAAAUUAGCAGA   1   |||||=|||||||||||||||||* targets:1545   UUCCGUGCCCAACUUUAAUCGUCC   1568 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023066M01, full insert sequence	NA	coding protein	psRNATarget
LQ235902.1	ncRNA:24   AAGGCGCGGGUUGAAAUUAGCAGA   1   ||||||||*|||=||||||||||| targets:12   UUCCGCGCGCAAUUUUAAUCGUCU   35 Target Full Sequence	2.5	Sequence 1897 from Patent EP2985353	NA	coding protein	psRNATarget
HI403772.1	ncRNA:24   AAGGCGCGGGUUGAAAUUAGCAGA   1   ||||||||*|||=||||||||||| targets:12   UUCCGCGCGCAAUUUUAAUCGUCU   35 Target Full Sequence	2.5	Sequence 1897 from Patent EP2074227	NA	coding protein	psRNATarget
JB164233.1	ncRNA:24   AAGGCGCGGGUUGAAAUUAGCAGA   1   ||||||||*|||=||||||||||| targets:12   UUCCGCGCGCAAUUUUAAUCGUCU   35 Target Full Sequence	2.5	Sequence 1897 from Patent EP2559767	NA	coding protein	psRNATarget
AK071908.1	ncRNA:24   AAGGCGCGGGUUGAAAUUAGCAGA   1   ||||||||*||||||||||||||* targets:725   UUCCGCGCACAACUUUAAUCGUCC   748 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013060N22, full insert sequence	NA	coding protein	psRNATarget