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BaseInfo

ncRNA ID	novel_osa_miR3217
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:26133478-26133582 [-]
Reference genome	IRGSP-1.0
Source	SRR2040386;SRR2040395;SRR2040404;SRR2040408
Length	21
Mature sequence(if miRNA)	85 - UGAGAUAAAUCUUUUGAGCCU - 105
Stem-loop(if miRNA)	--          CUU             CG    G   U AC     GA   U   UGAGAUAAAU   UUGAGCCUAAUUA  CCAU AUU G  AAUGU  UGC A   ||||||||||   |||||||||||||  |||| ||| |  |||||  |||   ACUCUGUUUA   AAUUCGGAUUAAU  GGUA UAA C  UUACA  AUG C AC          AAU             UA    G   U GU     -A   A
Stem-loop sequence	UGAGAUAAAUCUUUUGAGCCUAAUUACGCCAUGAUUUGACAAUGUGAUGCUACAGUAAACAUUUGCUAAUGAUGGAUUAAUUAGGCUUAAUAAAUUUGUCUCACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT831729.1	ncRNA:21   UCCGAGUUUUCUAAAUAGAGU   1   |||||||||||||||=||||| targets:455   AGGCUCAAAAGAUUUGUCUCA   475 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117A02, full insert sequence	NA	coding protein	psRNATarget
AK288192.1	ncRNA:21   UCCGAGUUUUCUAAAUAGAGU   1   ||||||||||||||||||||= targets:2263   AGGCUCAAAAGAUUUAUCUCG   2283 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090007C12, full insert sequence	NA	coding protein	psRNATarget
CT837754.1	ncRNA:21   UCCGAGUUUUCUAAAUAGAGU   1   |||||||||||||||=||||= targets:1366   AGGCUCAAAAGAUUUGUCUCG   1386 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120A23, full insert sequence	NA	coding protein	psRNATarget
AK288244.1	ncRNA:21   UCCGAGUUUUCUAAAUAGAGU   1   ||||||||||||||*|||||| targets:1691   AGGCUCAAAAGAUUCAUCUCA   1711 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090014C01, full insert sequence	NA	coding protein	psRNATarget
AK105537.1	ncRNA:21   UCCGAGUUUUCUAAAUAGAGU   1   |||||=||||||||*|||||| targets:687   AGGCUUAAAAGAUUCAUCUCA   707 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-127-H05, full insert sequence	NA	coding protein	psRNATarget
AK120219.1	ncRNA:21   UCCGAGUUUUCUAAAUAGAGU   1   ||||||||||||||*|||||= targets:612   AGGCUCAAAAGAUUCAUCUCG   632 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013041B17, full insert sequence	NA	coding protein	psRNATarget
AK241322.1	ncRNA:21   UCCGAGUUUUCUAAAUAGAGU   1   ||||||||||||||*|||||= targets:2142   AGGCUCAAAAGAUUCAUCUCG   2162 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065142K05, full insert sequence	NA	coding protein	psRNATarget
XM_015757506.1	ncRNA:21   UCCGAGUUUUCUAAAUAGAGU   1   ||||||||||||||*|||||= targets:2135   AGGCUCAAAAGAUUCAUCUCG   2155 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9268466 (LOC9268466), transcript variant X1, mRNA	uncharacterized LOC9268466(LOC9268466)	coding protein	psRNATarget
AK241212.1	ncRNA:21   UCCGAGUUUUCUAAAUAGAGU   1   |||||=||||*|||||||||| targets:554   AGGCUUAAAAAAUUUAUCUCA   574 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065122M15, full insert sequence	NA	coding protein	psRNATarget
AK288328.1	ncRNA:21   UCCGAGUUUUCUAAAUAGAGU   1   **|||=|||||||||=||||| targets:328   UAGCUUAAAAGAUUUGUCUCA   348 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090022I04, full insert sequence	NA	coding protein	psRNATarget