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BaseInfo

ncRNA ID	novel_osa_miR3213
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:7359150-7359214 [-]
Reference genome	IRGSP-1.0
Source	SRR2040386
Length	24
Mature sequence(if miRNA)	42 - AUAAUAUAUUAUAGGUGUCGGUUU - 65
Stem-loop(if miRNA)	--A                            U    UAAUAUAUUAUAGGUGUCGGUUUUAAGU A    |||||||||||||||||||||||||||| A    AUUAUAUAAUAUCCACAGCCAAAAUUCG C GAA                            C
Stem-loop sequence	AUAAUAUAUUAUAGGUGUCGGUUUUAAGUUAACCGCUUAAAACCGACACCUAUAAUAUAUUAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288739.1	ncRNA:24   UUUGGCUGUGGAUAUUAUAUAAUA   1   |||||||=|||||||||||||||| targets:2646   AAACCGAUACCUAUAAUAUAUUAU   2669 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090063N20, full insert sequence	NA	coding protein	psRNATarget
AK070414.1	ncRNA:24   UUUGGCUGUGGAUAUUAUAUAAUA   1   ||||||=|||=||||||||||||| targets:1097   AAACCGGCACUUAUAAUAUAUUAU   1120 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023053H09, full insert sequence	NA	coding protein	psRNATarget
AK070414.1	ncRNA:24   UUUGGCUGUGGAUAUUAUAUAAUA   1   *||||||||||||||||||||||* targets:1138   UAACCGACACCUAUAAUAUAUUAC   1161 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023053H09, full insert sequence	NA	coding protein	psRNATarget
XM_015778506.1	ncRNA:24   UUUGGCUGUGGAUAUUAUAUAAUA   1   |||||||=||||||=||||||||| targets:150   AAACCGAUACCUAUGAUAUAUUAU   173 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable inactive methyltransferase Os04g0175900 (LOC4335079), transcript variant X1, mRNA	probable inactive methyltransferase Os04g0175900(LOC4335079)	coding protein	psRNATarget
XM_015778507.1	ncRNA:24   UUUGGCUGUGGAUAUUAUAUAAUA   1   |||||||=||||||=||||||||| targets:39   AAACCGAUACCUAUGAUAUAUUAU   62 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable inactive methyltransferase Os04g0175900 (LOC4335079), transcript variant X2, mRNA	probable inactive methyltransferase Os04g0175900(LOC4335079)	coding protein	psRNATarget
AK288826.1	ncRNA:24   UUUGGCUGUGGAUAUUAUAUAAUA   1   =|||||||||||||||*||||||| targets:4706   GAACCGACACCUAUAAGAUAUUAU   4729 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090073I23, full insert sequence	NA	coding protein	psRNATarget
XM_015773629.1	ncRNA:24   UUUGGCUGUGGAUAUUAUAUAAUA   1   |||||*|||=|||||||||||||| targets:876   AAACCAACAUCUAUAAUAUAUUAU   899 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g28650 (LOC4332910), mRNA	GDSL esterase/lipase At1g28650(LOC4332910)	coding protein	psRNATarget
AK288845.1	ncRNA:24   UUUGGCUGUGGAUAUUAUAUAAUA   1   |||=||||||||||||*||||||| targets:3731   AAAUCGACACCUAUAAAAUAUUAU   3754 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090075D02, full insert sequence	NA	coding protein	psRNATarget
AK288922.1	ncRNA:24   UUUGGCUGUGGAUAUUAUAUAAUA   1   |||||*|||=|||||||||||||| targets:1071   AAACCAACAUCUAUAAUAUAUUAU   1094 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090081M23, full insert sequence	NA	coding protein	psRNATarget
XM_015773630.1	ncRNA:24   UUUGGCUGUGGAUAUUAUAUAAUA   1   |||||*|||=|||||||||||||| targets:1596   AAACCAACAUCUAUAAUAUAUUAU   1619 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g28650-like (LOC107278316), mRNA	GDSL esterase/lipase At1g28650-like(LOC107278316)	coding protein	psRNATarget
AK069235.1	ncRNA:24   UUUGGCUGUGGAUAUUAUAUAAUA   1   ||||=|=*|||||||||||||||| targets:3417   AAACUGGGACCUAUAAUAUAUUAU   3440 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023010D04, full insert sequence	NA	coding protein	psRNATarget
AK288262.1	ncRNA:24   UUUGGCUGUGGAUAUUAUAUAAUA   1   |*|=****|||||||||||||||| targets:308   AUAUAAUAACCUAUAAUAUAUUAU   331 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090016B02, full insert sequence	NA	coding protein	psRNATarget