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BaseInfo

ncRNA ID novel_osa_miR3209
Species Oryza sativa
Class miRNA
Genome position Chr5:25366336-25366534 [+]
Reference genome IRGSP-1.0
Source SRR2040386
Length 22
Mature sequence(if miRNA) 1 - AACGUAGACUAAUGACAAAACC - 22
Stem-loop(if miRNA) --               C     CC   C    UCCCU   -        CA       UCUA         A                C     GA   U
  AACGUAGACUAAUGA AAAAC  AUU CAUA     AGA CUAAUUCG  AGACAAA    UUGAGCCUA UUAAUCUAUGAUUGGC UAUGU  UGC A
  ||||||||||||||| |||||  ||| ||||     ||| ||||||||  |||||||    ||||||||| |||||||||||||||| |||||  |||
  UUGCAUCUGAUUAUU UUUUG  UAA GUAU     UCU GAUUAAGC  UCUGUUU    AAUUCGGAU AAUUAGGUAUUAAUCG GUACA  AUG C
AU               A     AU   C    -UUAC   C        AC       UAAA         C                U     -A   A
Stem-loop sequence AACGUAGACUAAUGACAAAACCCAUUCCAUAUCCCUAGACUAAUUCGCAAGACAAAUCUAUUGAGCCUAAUUAAUCUAUGAUUGGCCUAUGUGAUGCUACAGUAAACAUGUGCUAAUUAUGGAUUAACUAGGCUUAAAAAUUUUGUCUCACGAAUUAGCUCUCAUUUAUGCAAUUAGUUUUAUUAUUAGUCUACGUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288236.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||||||||||||||||
targets:1886   UGUUUUGUCAUUAGUCUACGUU   1907

0.0 Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence NA coding protein psRNATarget
AK119753.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||||||||||
targets:2060   UGUUUUGUUAUUAGUCUACGUU   2081

1.0 Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence NA coding protein psRNATarget
AK288216.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||||||=|||
targets:765   UGUUUUGUUAUUAGUCUAUGUU   786

2.5 Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence NA coding protein psRNATarget
XM_015769825.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||||||=|||
targets:760   UGUUUUGUUAUUAGUCUAUGUU   781

2.5 PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA BTB/POZ domain-containing protein At4g30940(LOC4329965) coding protein psRNATarget
AK288682.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||||||=|||
targets:476   UGUUUUGUUAUUAGUCUAUGUU   497

2.5 Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence NA coding protein psRNATarget
CT837782.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||||||=|||
targets:859   UGUUUUGUUAUUAGUCUAUGUU   880

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence NA coding protein psRNATarget
AK067679.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||||||=|||
targets:2231   UGUUUUGUUAUUAGUCUAUGUU   2252

2.5 Oryza sativa Japonica Group cDNA clone:J013114G19, full insert sequence NA coding protein psRNATarget
XM_015764825.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  **||||||=|||||||||||||
targets:106   UAUUUUGUUAUUAGUCUACGUU   127

1.0 PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA pre-mRNA-splicing factor CWC22 homolog(LOC4351904) coding protein psRNATarget
AM778048.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  **||||||=|||||||||||||
targets:106   UAUUUUGUUAUUAGUCUACGUU   127

1.0 Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena NA coding protein psRNATarget
AK288631.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||*|||||||
targets:2858   UGUUUUGUUAUUAGACUACGUU   2879

2.5 Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence NA coding protein psRNATarget
AK288908.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||*|||||||
targets:801   UGUUUUGUUAUUAGACUACGUU   822

2.5 Oryza sativa Japonica Group cDNA, clone: J090081D16, full insert sequence NA coding protein psRNATarget
XM_015766387.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=||||*||||||||
targets:23   UGUUUUGUUAUUAAUCUACGUU   44

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325753 (LOC4325753), mRNA uncharacterized LOC4325753(LOC4325753) coding protein psRNATarget
AK288192.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||*|||||||
targets:1976   UGUUUUGUUAUUAGACUACGUU   1997

2.5 Oryza sativa Japonica Group cDNA, clone: J090007C12, full insert sequence NA coding protein psRNATarget
AK288948.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||*|||||||
targets:2446   UGUUUUGUUAUUAGACUACGUU   2467

2.5 Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence NA coding protein psRNATarget
AK067578.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||*|=|||||||||||||
targets:1803   UGUUUUAUUAUUAGUCUACGUU   1824

2.0 Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence NA coding protein psRNATarget
XM_015789357.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||*|||||||
targets:1151   UGUUUUGUUAUUAGACUACGUU   1172

2.5 PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X2, mRNA peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342) coding protein psRNATarget
XM_015789358.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||*|||||||
targets:1186   UGUUUUGUUAUUAGACUACGUU   1207

2.5 PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X3, mRNA peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342) coding protein psRNATarget
XM_015789356.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||*|||||||
targets:1180   UGUUUUGUUAUUAGACUACGUU   1201

2.5 PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X1, mRNA peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342) coding protein psRNATarget
AK240803.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||*|||||||
targets:1091   UGUUUUGUUAUUAGACUACGUU   1112

2.5 Oryza sativa Japonica Group cDNA, clone: J065005A21, full insert sequence NA coding protein psRNATarget
CT837862.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|*|||||||||||
targets:949   UGUUUUGUUACUAGUCUACGUU   970

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123J02, full insert sequence NA coding protein psRNATarget
AK288422.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||=|||||*|||||||
targets:749   UGUUUUGUUAUUAGACUACGUU   770

2.5 Oryza sativa Japonica Group cDNA, clone: J090032F09, full insert sequence NA coding protein psRNATarget
JB164806.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||*|||||||||=|||
targets:226   AGUUUUGUAAUUAGUCUAUGUU   247

2.5 Sequence 2470 from Patent EP2559767 NA coding protein psRNATarget
HI404345.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||*|||||||||=|||
targets:226   AGUUUUGUAAUUAGUCUAUGUU   247

2.5 Sequence 2470 from Patent EP2074227 NA coding protein psRNATarget
LQ236475.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  *|||||||*|||||||||=|||
targets:226   AGUUUUGUAAUUAGUCUAUGUU   247

2.5 Sequence 2470 from Patent EP2985353 NA coding protein psRNATarget
AK288937.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  **||||||=|||||||||*|||
targets:2   AAUUUUGUUAUUAGUCUAAGUU   23

2.5 Oryza sativa Japonica Group cDNA, clone: J090082N15, full insert sequence NA coding protein psRNATarget
CT828685.1
ncRNA:22   CCAAAACAGUAAUCAGAUGCAA   1
  **||||||=|||||*|||||||
targets:930   UAUUUUGUUAUUAGACUACGUU   951

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124K24, full insert sequence NA coding protein psRNATarget
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