Search result

BaseInfo

ncRNA ID	novel_osa_miR3206
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:661742-661830 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1298766;SRR1556020
Length	24
Mature sequence(if miRNA)	66 - AUAUGAGAAAUGUUAGAAUGACUU - 89
Stem-loop(if miRNA)	--               AC  C         A          AU   GUCAUUCUAGCAUUU  CA AUUCAUAUU AUGUUAAUGA  C   |||||||||||||||  || ||||||||| ||||||||||  U   CAGUAAGAUUGUAAA  GU UAAGUAUAA UACAAUUACU  A UU               GA  A         C          AA
Stem-loop sequence	GUCAUUCUAGCAUUUACCACAUUCAUAUUAAUGUUAAUGAAUCUAAAUCAUUAACAUCAAUAUGAAUAUGAGAAAUGUUAGAAUGACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015767720.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||||||||||=|||||||||||| targets:564   AAGUCAUUCUAGCAUUUCUCAUAU   587 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330679 (LOC4330679), mRNA	uncharacterized LOC4330679(LOC4330679)	coding protein	psRNATarget
AK288502.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||||||||||=|||||||||||| targets:563   AAGUCAUUCUAGCAUUUCUCAUAU   586 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence	NA	coding protein	psRNATarget
XM_015793336.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||||||||||||||||=|||||| targets:1561   AAGUCAUUCUAACAUUUUUCAUAU   1584 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X3, mRNA	transcription factor bHLH112(LOC9271688)	coding protein	psRNATarget
XM_015793335.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||||||||||||||||=|||||| targets:1714   AAGUCAUUCUAACAUUUUUCAUAU   1737 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X2, mRNA	transcription factor bHLH112(LOC9271688)	coding protein	psRNATarget
XM_015793334.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||||||||||||||||=|||||| targets:1732   AAGUCAUUCUAACAUUUUUCAUAU   1755 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X1, mRNA	transcription factor bHLH112(LOC9271688)	coding protein	psRNATarget
XM_015795314.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   ||||||||||==|||||||||||| targets:1740   AAGUCAUUCUGGCAUUUCUCAUAU   1763 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 89A2 (LOC4344671), mRNA	cytochrome P450 89A2(LOC4344671)	coding protein	psRNATarget
XM_015790773.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||||||||||*|||||||||||| targets:1223   AAGUCAUUCUAUCAUUUCUCAUAU   1246 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group peroxidase 1-like (LOC107275918), mRNA	peroxidase 1-like(LOC107275918)	coding protein	psRNATarget
XM_015766664.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||||||||||*|||||||||||| targets:3748   AAGUCAUUCUAUCAUUUCUCAUAU   3771 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X6, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766665.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||||||||||*|||||||||||| targets:4168   AAGUCAUUCUAUCAUUUCUCAUAU   4191 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X7, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766662.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||||||||||*|||||||||||| targets:4425   AAGUCAUUCUAUCAUUUCUCAUAU   4448 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X4, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766660.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||||||||||*|||||||||||| targets:4457   AAGUCAUUCUAUCAUUUCUCAUAU   4480 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X2, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766663.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||||||||||*|||||||||||| targets:4997   AAGUCAUUCUAUCAUUUCUCAUAU   5020 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X5, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766659.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||||||||||*|||||||||||| targets:5085   AAGUCAUUCUAUCAUUUCUCAUAU   5108 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X1, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766661.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||||||||||*|||||||||||| targets:5118   AAGUCAUUCUAUCAUUUCUCAUAU   5141 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X3, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
AK288266.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   |||*|||||||=|||||||||||| targets:1539   AAGCCAUUCUAGCAUUUCUCAUAU   1562 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090016H18, full insert sequence	NA	coding protein	psRNATarget
AK067512.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   ||*||||||||||||||||||*|| targets:2265   AAAUCAUUCUAACAUUUCUCACAU   2288 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence	NA	coding protein	psRNATarget
AK072272.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   ||||*|||*||||||||||||*|| targets:1826   AAGUAAUUGUAACAUUUCUCACAU   1849 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023004C21, full insert sequence	NA	coding protein	psRNATarget
XM_015759228.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   ||||*|||*||||||||||||*|| targets:2086   AAGUAAUUGUAACAUUUCUCACAU   2109 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group MLO-like protein 9 (LOC4349258), mRNA	MLO-like protein 9(LOC4349258)	coding protein	psRNATarget
XM_015775120.1	ncRNA:24   UUCAGUAAGAUUGUAAAGAGUAUA   1   **||==||*|=||||||||||||| targets:3753   CUGUUGUUAUGACAUUUCUCAUAU   3776 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group translational activator GCN1 (LOC4333935), mRNA	translational activator GCN1(LOC4333935)	coding protein	psRNATarget