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BaseInfo

ncRNA ID	novel_osa_miR3204
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:28155049-28155144 [-]
Reference genome	IRGSP-1.0
Source	SRR2040386;SRR1612404
Length	21
Mature sequence(if miRNA)	76 - AACAAAAAGUAACUCGAGGUA - 96
Stem-loop(if miRNA)	--           A            ---      UAG   CAAC     G   AACAAAAAGUA CUCGAGGUACCG   CAUUAU   AUC    GAUCG A   ||||||||||| ||||||||||||   ||||||   |||    |||||   UUGUUUUUCAU GAGCUCCAUGGC   GUAGUG   UAG    UUAGC A AG           A            CAU      CCA   ---U     A
Stem-loop sequence	AACAAAAAGUAACUCGAGGUACCGCAUUAUUAGAUCCAACGAUCGGAAACGAUUUGAUACCGUGAUGUACCGGUACCUCGAGAUACUUUUUGUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015778220.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:3152   UACCUCGAGAUACUUUUUGUU   3172 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
XM_015778221.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:3101   UACCUCGAGAUACUUUUUGUU   3121 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
AK240791.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:263   UACCUCGAGAUACUUUUUGUU   283 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK287529.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:263   UACCUCGAGAUACUUUUUGUU   283 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
XM_015779655.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:1596   UACCUCGAGAUACUUUUUGUU   1616 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA	uncharacterized LOC107280684(LOC107280684)	coding protein	psRNATarget
AK065859.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:1605   UACCUCGAGAUACUUUUUGUU   1625 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013043N06, full insert sequence	NA	coding protein	psRNATarget
XM_015763409.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:1603   UACCUCGAGAUACUUUUUGUU   1623 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351882 (LOC4351882), mRNA	uncharacterized LOC4351882(LOC4351882)	coding protein	psRNATarget
XM_015765802.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:1528   UACCUCGAGGUACUUUUUGUU   1548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA	polygalacturonase(LOC4326679)	coding protein	psRNATarget
AK103106.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:1529   UACCUCGAGGUACUUUUUGUU   1549 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence	NA	coding protein	psRNATarget
XM_015786123.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:752   UACCUCGAGAUACUUUUUGUU   772 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA	uncharacterized LOC4340617(LOC4340617)	coding protein	psRNATarget
HI404431.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:138   UACCUCGAGAUACUUUUUGUU   158 Target Full Sequence	1.5	Sequence 2556 from Patent EP2074227	NA	coding protein	psRNATarget
JB164892.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:138   UACCUCGAGAUACUUUUUGUU   158 Target Full Sequence	1.5	Sequence 2556 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236561.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:138   UACCUCGAGAUACUUUUUGUU   158 Target Full Sequence	1.5	Sequence 2556 from Patent EP2985353	NA	coding protein	psRNATarget
LQ236668.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:110   UACCUCGAGAUACUUUUUGUU   130 Target Full Sequence	1.5	Sequence 2663 from Patent EP2985353	NA	coding protein	psRNATarget
HI404538.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:110   UACCUCGAGAUACUUUUUGUU   130 Target Full Sequence	1.5	Sequence 2663 from Patent EP2074227	NA	coding protein	psRNATarget
JB164999.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   |||||||||*||||||||||| targets:110   UACCUCGAGAUACUUUUUGUU   130 Target Full Sequence	1.5	Sequence 2663 from Patent EP2559767	NA	coding protein	psRNATarget
HI404119.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   *|=||||||*||||||||||| targets:143   CAUCUCGAGAUACUUUUUGUU   163 Target Full Sequence	2.5	Sequence 2244 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236249.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   *|=||||||*||||||||||| targets:143   CAUCUCGAGAUACUUUUUGUU   163 Target Full Sequence	2.5	Sequence 2244 from Patent EP2985353	NA	coding protein	psRNATarget
JB164580.1	ncRNA:21   AUGGAGCUCAAUGAAAAACAA   1   *|=||||||*||||||||||| targets:143   CAUCUCGAGAUACUUUUUGUU   163 Target Full Sequence	2.5	Sequence 2244 from Patent EP2559767	NA	coding protein	psRNATarget