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BaseInfo

ncRNA ID	novel_osa_miR3203
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:6371096-6371170 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2099428;SRR4407960;SRR1556020
Length	24
Mature sequence(if miRNA)	52 - GUUAUCAACCGGGACUAAAGAUGG - 75
Stem-loop(if miRNA)	--C                           C    CU    UCUUUAGUCCCGGUUGAUAACAACAAC GGGA  U    ||||||||||||||||||||||||||| ||||  U    AGAAAUCAGGGCCAACUAUUGUUGUUG CCCU  U GGU                           U    CA
Stem-loop sequence	CUCUUUAGUCCCGGUUGAUAACAACAACCGGGACUUUUACUCCCUGUUGUUGUUAUCAACCGGGACUAAAGAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288224.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   **|||||||||||||||||||||| targets:1259   GGAUCUUUAGUCCCGGUUGAUAAC   1282 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   **|***|||||||||||||=|||| targets:1842   AAAAACUUAGUCCCGGUUGGUAAC   1865 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   **|||||||||||||||||=|||| targets:1699   GGAUCUUUAGUCCCGGUUGGUAAC   1722 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   =*||=|||||||||||||||*||| targets:1590   UGAUUUUUAGUCCCGGUUGAAAAC   1613 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   =*|||||||||||||||||=|||| targets:142   UGAUCUUUAGUCCCGGUUGGUAAC   165 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK289098.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   **|||||||||||||||||=|||| targets:237   AGAUCUUUAGUCCCGGUUGGUAAC   260 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   **|||||||||||||||||=|||| targets:2362   AAAUCUUUAGUCCCGGUUGGUAAC   2385 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   =*||||||||*||||||||=|||| targets:1310   UGAUCUUUAGCCCCGGUUGGUAAC   1333 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   =*|||||||||||||||||=|||| targets:46   UGAUCUUUAGUCCCGGUUGGUAAC   69 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK242216.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   ||=|=|*||||||||||||||||| targets:561   CCGUUUGUAGUCCCGGUUGAUAAC   584 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence	NA	coding protein	psRNATarget
AK288544.1	ncRNA:24   GG---UAGAAAUCAGGGCCAACUAUUG   1   ||---|||||||||||||||||||=|* targets:1785   CCUAGAUCUUUAGUCCCGGUUGAUGAG   1811 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090046G24, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   =*||||||||||||||||||*||| targets:424   UGAUCUUUAGUCCCGGUUGAAAAC   447 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288598.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   **=*|||||||||||||||=|||* targets:942   GGGACUUUAGUCCCGGUUGGUAAG   965 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   =*||||*|||||||||||||*||| targets:1386   UGAUCUCUAGUCCCGGUUGAAAAC   1409 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:24   GGUAGAAAUCAGGGCCAACUAUUG   1   =*||||*|||||||||||||*||| targets:1392   UGAUCUCUAGUCCCGGUUGAAAAC   1415 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget