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BaseInfo

ncRNA ID novel_osa_miR3200
Species Oryza sativa
Class miRNA
Genome position Chr4:10474198-10474398 [+]
Reference genome IRGSP-1.0
Source SRR2040386
Length 24
Mature sequence(if miRNA) 1 - AACGUAGAUUAUCGACAAAACCGA - 24
Stem-loop(if miRNA) --            C        CG   C       CCU           C                U                 ------       -UG  U
  AACGUAGAUUAU GACAAAAC  AUU CAUAACC   AGGCUAUUUUG GAGACGAAUCUAAUGA GUAUAUUAAUCUAUGAU      UAGUGAU   AU A
  |||||||||||| ||||||||  ||| |||||||   ||||||||||| |||||||||||||||| |||||||||||||||||      |||||||   ||
  UUGUAUUUAAUG CUGUUUUG  UAA GUAUUGG   UCCGAUAAAAC CUCUGCUUAGAUUGCU CAUAUAAUUAGGUACUA      GUCACUA   UG C
AU            A        AG   A       AAU           A                C                 AACGAU       CGA  U
Stem-loop sequence AACGUAGAUUAUCGACAAAACCGAUUCCAUAACCCCUAGGCUAUUUUGCGAGACGAAUCUAAUGAUGUAUAUUAAUCUAUGAUUAGUGAUUGAUUACUGUAGCAUCACUGUAGCAAAUCAUGGAUUAAUAUACCUCGUUAGAUUCGUCUCACAAAAUAGCCUUAAGGUUAUGAAAUGAGUUUUGUCAGUAAUUUAUGUUUA