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BaseInfo

ncRNA ID novel_osa_miR3199
Species Oryza sativa
Class miRNA
Genome position Chr10:6176532-6176657 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR4407956;SRR4407961;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - GAAUGUUUGGACAUAUGCAUGGAG - 24
Stem-loop(if miRNA) -   -    G               A            U           A     A     GA
 UCC UGUA GUGUUCAAACGUUCG UAUGAUAGGGUG AAAAUUUUUGU UGGGA CUAAG  C
 ||| |||| ||||||||||||||| |||||||||||| ||||||||||| ||||| |||||
 AGG ACGU UACAGGUUUGUAAGC AUACUGUUCCAC UUUUAAAAACG GCCCU GAUUU  C
G   U    A               G            -           -     A     GU
Stem-loop sequence UCCUGUAGGUGUUCAAACGUUCGAUAUGAUAGGGUGUAAAAUUUUUGUAUGGGAACUAAGGACCUGUUUAGAUCCCGGCAAAAAUUUUCACCUUGUCAUAGCGAAUGUUUGGACAUAUGCAUGGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK107289.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  ||||||||||=||||||||=||||
targets:2132   CUCCAUGCAUGUGUCCAAAUAUUC   2155

2.5 Oryza sativa Japonica Group cDNA clone:002-126-B09, full insert sequence NA coding protein psRNATarget
AK103318.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  ||||||||||=||||||||=||||
targets:1228   CUCCAUGCAUGUGUCCAAAUAUUC   1251

2.5 Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence NA coding protein psRNATarget
AK105537.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  |||||||=||=||||||||||||=
targets:754   CUCCAUGUAUGUGUCCAAACAUUU   777

3.0 Oryza sativa Japonica Group cDNA clone:001-127-H05, full insert sequence NA coding protein psRNATarget
AK121113.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  ||||||||||=||||||||*||||
targets:2780   CUCCAUGCAUGUGUCCAAAGAUUC   2803

2.5 Oryza sativa Japonica Group cDNA clone:J023073I18, full insert sequence NA coding protein psRNATarget
AK120736.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  ||||||||||=||||*||||||||
targets:3181   CUCCAUGCAUGUGUCAAAACAUUC   3204

2.5 Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence NA coding protein psRNATarget
AK120219.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  ||||||*=|||||||||||||||=
targets:682   CUCCAUAUAUAUGUCCAAACAUUU   705

3.0 Oryza sativa Japonica Group cDNA clone:J013041B17, full insert sequence NA coding protein psRNATarget
AK288540.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  |||=||*|||||||||||||=|||
targets:1806   CUCUAUACAUAUGUCCAAACGUUC   1829

2.5 Oryza sativa Japonica Group cDNA, clone: J090045N03, full insert sequence NA coding protein psRNATarget
XM_015761897.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  |||=||*|||=|||||||||||||
targets:74   CUCUAUACAUGUGUCCAAACAUUC   97

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X7, mRNA uncharacterized LOC4350929(LOC4350929) coding protein psRNATarget
XM_015761894.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  |||=||*|||=|||||||||||||
targets:74   CUCUAUACAUGUGUCCAAACAUUC   97

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X5, mRNA uncharacterized LOC4350929(LOC4350929) coding protein psRNATarget
XM_015761891.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  |||=||*|||=|||||||||||||
targets:74   CUCUAUACAUGUGUCCAAACAUUC   97

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X2, mRNA uncharacterized LOC4350929(LOC4350929) coding protein psRNATarget
XM_015769710.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  |*|||||||||||||||||=|||=
targets:3007   CCCCAUGCAUAUGUCCAAAUAUUU   3030

2.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X2, mRNA disease resistance protein RPP13(LOC4328990) coding protein psRNATarget
XM_015769709.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  |*|||||||||||||||||=|||=
targets:3141   CCCCAUGCAUAUGUCCAAAUAUUU   3164

2.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X1, mRNA disease resistance protein RPP13(LOC4328990) coding protein psRNATarget
XM_015761890.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  |||=||*|||=|||||||||||||
targets:74   CUCUAUACAUGUGUCCAAACAUUC   97

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X1, mRNA uncharacterized LOC4350929(LOC4350929) coding protein psRNATarget
AK288279.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  ||||||*|||=||||||||||||=
targets:5768   CUCCAUACAUGUGUCCAAACAUUU   5791

3.0 Oryza sativa Japonica Group cDNA, clone: J090017N13, full insert sequence NA coding protein psRNATarget
AK059412.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  **|=||*||*|||||||||||||=
targets:1193   ACCUAUUCAAAUGUCCAAACAUUU   1216

3.0 Oryza sativa Japonica Group cDNA clone:001-027-C11, full insert sequence NA coding protein psRNATarget
XM_015780953.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  **|=||*||*|||||||||||||=
targets:1888   ACCUAUUCAAAUGUCCAAACAUUU   1911

3.0 PREDICTED: Oryza sativa Japonica Group O-glucosyltransferase rumi homolog (LOC107275790), transcript variant X2, mRNA O-glucosyltransferase rumi homolog(LOC107275790) coding protein psRNATarget
XM_015780952.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  **|=||*||*|||||||||||||=
targets:1894   ACCUAUUCAAAUGUCCAAACAUUU   1917

3.0 PREDICTED: Oryza sativa Japonica Group O-glucosyltransferase rumi homolog (LOC107275790), transcript variant X1, mRNA O-glucosyltransferase rumi homolog(LOC107275790) coding protein psRNATarget
AK103012.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  **|=||*||*|||||||||||||=
targets:2043   ACCUAUUCAAAUGUCCAAACAUUU   2066

3.0 Oryza sativa Japonica Group cDNA clone:J033116K10, full insert sequence NA coding protein psRNATarget
XM_015780955.1
ncRNA:24   GAGGUACGUAUACAGGUUUGUAAG   1
  **|=||*||*|||||||||||||=
targets:2040   ACCUAUUCAAAUGUCCAAACAUUU   2063

3.0 PREDICTED: Oryza sativa Japonica Group O-glucosyltransferase rumi homolog (LOC107275790), transcript variant X3, mRNA O-glucosyltransferase rumi homolog(LOC107275790) coding protein psRNATarget
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