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BaseInfo

ncRNA ID	novel_osa_miR3197
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:12991252-12991312 [-]
Reference genome	IRGSP-1.0
Source	SRR2040386
Length	24
Mature sequence(if miRNA)	38 - AAUCCACUUAUAGAUCAAAAUAAG - 61
Stem-loop(if miRNA)	--     A       A           CGC   AAUCC CUUAUAG UCAAAAUAAGC   G   ||||| ||||||| |||||||||||   A   UUGGG GAAUAUC AGUUUUAUUCG   A AC     C       C           CUC
Stem-loop sequence	AAUCCACUUAUAGAUCAAAAUAAGCCGCGAACUCGCUUAUUUUGACCUAUAAGCGGGUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015789926.1	ncRNA:24   GAAUAAAACUAGAUAUUCACCUAA   1   |||||||||||=|||||||||||| targets:1119   CUUAUUUUGAUUUAUAAGUGGAUU   1142 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable xyloglucan endotransglucosylase/hydrolase protein 32 (LOC4343230), mRNA	probable xyloglucan endotransglucosylase/hydrolase protein 32(LOC4343230)	coding protein	psRNATarget
CT837930.1	ncRNA:24   GAAUAAAACUAGAUAUUCACCUAA   1   |||||||||||=|||||||||||| targets:1097   CUUAUUUUGAUUUAUAAGUGGAUU   1120 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108K18, full insert sequence	NA	coding protein	psRNATarget
AK243098.1	ncRNA:24   GAAUAAAACUAGAUAUUCACCUAA   1   |||||||||||=|||||||||||| targets:1119   CUUAUUUUGAUUUAUAAGUGGAUU   1142 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J100024I07, full insert sequence	NA	coding protein	psRNATarget
XM_015755632.1	ncRNA:24   GAAUAAAACUAGAUAUUCACCUAA   1   ||||||||*||=|||||||||||| targets:513   CUUAUUUUAAUUUAUAAGUGGAUU   536 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278284 (LOC107278284), mRNA	uncharacterized LOC107278284(LOC107278284)	coding protein	psRNATarget
XM_015755631.1	ncRNA:24   GAAUAAAACUAGAUAUUCACCUAA   1   ||||||||*||=|||||||||||| targets:493   CUUAUUUUAAUUUAUAAGUGGAUU   516 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9268423 (LOC9268423), mRNA	uncharacterized LOC9268423(LOC9268423)	coding protein	psRNATarget
AY688675.1	ncRNA:24   GAAUAAAACUAGAUAUUCACCUAA   1   ||||||||*||=|||||||||||| targets:415   CUUAUUUUAAUUUAUAAGUGGAUU   438 Target Full Sequence	2.5	Oryza sativa (japonica cultivar-group) LEA protein 12 (LEA12) mRNA, complete cds	NA	coding protein	psRNATarget
AK068457.1	ncRNA:24   GAAUAAAACUAGAUAUUCACCUAA   1   =|||||||||*||||||||||=|| targets:1869   UUUAUUUUGACCUAUAAGUGGGUU   1892 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013151A14, full insert sequence	NA	coding protein	psRNATarget
XM_015785563.1	ncRNA:24   GAAUAAAACUAGAUAUUCACCUAA   1   =|||||||||*||||||||||=|| targets:1872   UUUAUUUUGACCUAUAAGUGGGUU   1895 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group lysosomal Pro-X carboxypeptidase (LOC4341667), transcript variant X1, mRNA	lysosomal Pro-X carboxypeptidase(LOC4341667)	coding protein	psRNATarget
XM_015767687.1	ncRNA:24   GAAUAAAACUAGAUAUUCACCUAA   1   **|=||||||||||||||*||||* targets:1255   AGUGUUUUGAUCUAUAAGAGGAUA   1278 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 7 (LOC107276277), transcript variant X2, mRNA	calcineurin B-like protein 7(LOC107276277)	coding protein	psRNATarget
XM_015767686.1	ncRNA:24   GAAUAAAACUAGAUAUUCACCUAA   1   **|=||||||||||||||*||||* targets:1177   AGUGUUUUGAUCUAUAAGAGGAUA   1200 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 7 (LOC107276277), transcript variant X1, mRNA	calcineurin B-like protein 7(LOC107276277)	coding protein	psRNATarget