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BaseInfo

ncRNA ID	novel_osa_miR3193
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:8879301-8879441 [+]
Reference genome	IRGSP-1.0
Source	SRR2040386;SRR3123646;SRR5351738;SRR1738228
Length	24
Mature sequence(if miRNA)	1 - AGAUUCCGCCUGUAAACUGUGAGA - 24
Stem-loop(if miRNA)	--     CC  C      C       CA     A  A          AUCCAUCAUUA  AAAUAUUUACUGUAGC   AGAUU  GC UGUAAA UGUGAGA  AAUUU UU AGCCUAAUUA           GC                A   |||||  || |||||| |||||||  ||||| || ||||||||||           ||                U   UCUAA  CG ACAUUU AUGCUCU  UUAGA AA UCGGAUUAAU           CG                C UG     --  U      A       AC     A  C          ----------G  AUACUAAACUAUUACA
Stem-loop sequence	AGAUUCCGCCUGUAAACUGUGAGACAAAUUUAUUAAGCCUAAUUAAUCCAUCAUUAGCAAAUAUUUACUGUAGCAUCACAUUAUCAAAUCAUAGCGUAAUUAGGCUCAAAAGAUUCAUCUCGUAAUUUACAUGCAAUCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK099913.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   ||||=||||||||||||||||||| targets:806   UCUCGCAGUUUACAGGCGGAAUCU   829 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013116E13, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   ||||=||||||||||||||||||| targets:1773   UCUCGCAGUUUACAGGCGGAAUCU   1796 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AK288682.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   ||||=||||||||||||||||||| targets:446   UCUCGCAGUUUACAGGCGGAAUCU   469 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence	NA	coding protein	psRNATarget
AM778048.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   ||||=||||||||||||||||||| targets:76   UCUCGCAGUUUACAGGCGGAAUCU   99 Target Full Sequence	0.0	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AK064922.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   ||||=||||||||||||||||||| targets:2049   UCUCGCAGUUUACAGGCGGAAUCU   2072 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013000N12, full insert sequence	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   ||||=||||||||||||||||||| targets:76   UCUCGCAGUUUACAGGCGGAAUCU   99 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
CT837862.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   ||||=|||||||||||=||||||| targets:919   UCUCGCAGUUUACAGGUGGAAUCU   942 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123J02, full insert sequence	NA	coding protein	psRNATarget
XM_015769825.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   ||||=|||||||=||||||||||| targets:730   UCUCGCAGUUUAUAGGCGGAAUCU   753 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
AK288216.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   ||||=|||||||=||||||||||| targets:735   UCUCGCAGUUUAUAGGCGGAAUCU   758 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget
AK067679.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   ||||||||||||||*||||||||| targets:2201   UCUCACAGUUUACAUGCGGAAUCU   2224 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013114G19, full insert sequence	NA	coding protein	psRNATarget
CT837782.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   ||||=|||||||||||*||||||| targets:1537   UCUCGCAGUUUACAGGGGGAAUCU   1560 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
AK288617.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   ||||=||||||*|||||||||||| targets:2694   UCUCGCAGUUUUCAGGCGGAAUCU   2717 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence	NA	coding protein	psRNATarget
AK288343.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   *||||||||||||||||*|||||| targets:361   CCUCACAGUUUACAGGCAGAAUCU   384 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090023K08, full insert sequence	NA	coding protein	psRNATarget
AK119753.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   ||||=||*||||||*||||||||| targets:2030   UCUCGCAAUUUACAUGCGGAAUCU   2053 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence	NA	coding protein	psRNATarget
CT831025.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   *|*=|||*|||||||||*|||||| targets:1285   GCAUACACUUUACAGGCAGAAUCU   1308 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA059M17, full insert sequence	NA	coding protein	psRNATarget
XM_015770436.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   *|*=|||*|||||||||*|||||| targets:1333   GCAUACACUUUACAGGCAGAAUCU   1356 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ADP-ribosylation factor GTPase-activating protein AGD2 (LOC4330061), mRNA	ADP-ribosylation factor GTPase-activating protein AGD2(LOC4330061)	coding protein	psRNATarget
AK101701.1	ncRNA:24   AGAGUGUCAAAUGUCCGCCUUAGA   1   *|*=|||*|||||||||*|||||| targets:1340   GCAUACACUUUACAGGCAGAAUCU   1363 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033060E24, full insert sequence	NA	coding protein	psRNATarget