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BaseInfo

ncRNA ID novel_osa_miR3192
Species Oryza sativa
Class miRNA
Genome position Chr2:1820617-1820681 [-]
Reference genome IRGSP-1.0
Source SRR2040386;SRR2040404;SRR2040405;SRR2040407
Length 24
Mature sequence(if miRNA) 42 - GAUGAAUUAGAGCUAGUAGUUGGC - 65
Stem-loop(if miRNA) --G    A  AG  C               CU
   AUGA UU  AG UAGUAGUUGGCUAUA  A
   |||| ||  || |||||||||||||||  U
   UACU AA  UC GUUGUUAACCGAUAU  U
AUA    A  CU  A               AA
Stem-loop sequence GAUGAAUUAGAGCUAGUAGUUGGCUAUACUAUUAAUAUAGCCAAUUGUUGACUUCAAAUCAUAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015766338.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  ||||||||=|||||||||||||||
targets:9   GCCAACUAUUAGCUCUAAUUCAUC   32

1.0 PREDICTED: Oryza sativa Japonica Group L-gulonolactone oxidase 3 (LOC4327936), transcript variant X1, mRNA L-gulonolactone oxidase 3(LOC4327936) coding protein psRNATarget
XM_015766339.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  ||||||||=|||||||||||||||
targets:9   GCCAACUAUUAGCUCUAAUUCAUC   32

1.0 PREDICTED: Oryza sativa Japonica Group L-gulonolactone oxidase 3 (LOC4327936), transcript variant X2, mRNA L-gulonolactone oxidase 3(LOC4327936) coding protein psRNATarget
D16507.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  ||=|||||||||||||||||||||
targets:610   GCUAACUACUAGCUCUAAUUCAUC   633

0.0 Oryza sativa Japonica Group OSH1 mRNA for homeobox protein, complete cds NA coding protein psRNATarget
XM_015773906.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  ||=|||||||||||||||||||||
targets:610   GCUAACUACUAGCUCUAAUUCAUC   633

0.0 PREDICTED: Oryza sativa Japonica Group homeobox protein knotted-1-like 6 (LOC4333973), mRNA homeobox protein knotted-1-like 6(LOC4333973) coding protein psRNATarget
AK062967.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  ||||||||=|||||||||||||||
targets:788   GCCAACUAUUAGCUCUAAUUCAUC   811

1.0 Oryza sativa Japonica Group cDNA clone:001-109-D12, full insert sequence NA coding protein psRNATarget
AK100599.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  |||*||||||||||||||||||||
targets:824   GCCCACUACUAGCUCUAAUUCAUC   847

0.0 Oryza sativa Japonica Group cDNA clone:J023107C05, full insert sequence NA coding protein psRNATarget
AK288883.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  ||=|||||||||||||||*|||||
targets:47   GCUAACUACUAGCUCUAAAUCAUC   70

1.5 Oryza sativa Japonica Group cDNA, clone: J090079H22, full insert sequence NA coding protein psRNATarget
AK288976.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  ||||||||=||||||*||||||||
targets:2294   GCCAACUAUUAGCUCCAAUUCAUC   2317

2.5 Oryza sativa Japonica Group cDNA, clone: J090085K10, full insert sequence NA coding protein psRNATarget
XM_015779375.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  ||||||||=|||||||||*|||||
targets:2439   GCCAACUAUUAGCUCUAAAUCAUC   2462

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g05670, mitochondrial (LOC9271712), mRNA pentatricopeptide repeat-containing protein At1g05670, mitochondrial(LOC9271712) coding protein psRNATarget
AK073416.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  |=|||||||||||||*|||||||=
targets:3757   GUCAACUACUAGCUCCAAUUCAUU   3780

2.5 Oryza sativa Japonica Group cDNA clone:J033040D17, full insert sequence NA coding protein psRNATarget
AK288203.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  |||*|||||||||||*||||||||
targets:1156   GCCCACUACUAGCUCCAAUUCAUC   1179

1.5 Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence NA coding protein psRNATarget
AK288628.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  |||*||||=|||||||||*|||||
targets:1044   GCCCACUAUUAGCUCUAAAUCAUC   1067

2.5 Oryza sativa Japonica Group cDNA, clone: J090054O04, full insert sequence NA coding protein psRNATarget
XM_015760196.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  |=|*|||||||||||*||||||||
targets:1748   GUCUACUACUAGCUCCAAUUCAUC   1771

1.5 PREDICTED: Oryza sativa Japonica Group hexose carrier protein HEX6 (LOC4350836), mRNA hexose carrier protein HEX6(LOC4350836) coding protein psRNATarget
AK243302.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  |=|*|||||||||||*||||||||
targets:1741   GUCUACUACUAGCUCCAAUUCAUC   1764

1.5 Oryza sativa Japonica Group cDNA, clone: J100054J17, full insert sequence NA coding protein psRNATarget
CT830034.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  *||*||||||||||||||*|||||
targets:554   CCCCACUACUAGCUCUAAAUCAUC   577

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA034P19, full insert sequence NA coding protein psRNATarget
AK062268.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  *||*||||||||||||||*|||||
targets:548   CCCCACUACUAGCUCUAAAUCAUC   571

1.5 Oryza sativa Japonica Group cDNA clone:001-100-A04, full insert sequence NA coding protein psRNATarget
XM_015774848.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  *||*||||||||||||||*|||||
targets:545   CCCCACUACUAGCUCUAAAUCAUC   568

1.5 PREDICTED: Oryza sativa Japonica Group non-specific lipid-transfer protein (LOC4333547), mRNA non-specific lipid-transfer protein(LOC4333547) coding protein psRNATarget
AK064501.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  ||=*||||=||||||*||||||||
targets:1299   GCUCACUAUUAGCUCCAAUUCAUC   1322

2.5 Oryza sativa Japonica Group cDNA clone:002-111-D05, full insert sequence NA coding protein psRNATarget
XM_015776492.1
ncRNA:24   CGGUUGAUGAUCGAGAUUAAGUAG   1
  |=|*|||=|||||||*||||||||
targets:1097   GUCCACUGCUAGCUCCAAUUCAUC   1120

2.5 PREDICTED: Oryza sativa Japonica Group chaperone protein DnaJ-like (LOC107276449), mRNA chaperone protein DnaJ-like(LOC107276449) coding protein psRNATarget
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