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BaseInfo

ncRNA ID novel_osa_miR3191
Species Oryza sativa
Class miRNA
Genome position Chr11:6243909-6244121 [+]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1556020
Length 24
Mature sequence(if miRNA) 190 - GAAUGUUUGGACACAUGCAUGGAA - 213
Stem-loop(if miRNA) --    A                UA    A        U    --      CA    U -     --    UUGUGUA   G        --      --AUA       -  A
  CCAU UAUGUGUCCAAACAUU  AUGU ACAGGGUG AAAA  UUUUGC  GGGA C AAAUA  GCCU       GUA UGUGGUUC  GUGCAU     UAUAUAU UG U
  |||| ||||||||||||||||  |||| |||||||| ||||  ||||||  |||| | |||||  ||||       ||| ||||||||  ||||||     ||||||| ||
  GGUA GUACACAGGUUUGUAA  UACA UGUCCCAC UUUU  AAAACG  CCCU G UUUAU  CGGA       UAU GCACCGAG  UACGUA     AUAUAUA AC C
AA    C                GC    C        -    CA      CA    U A     CC    ---UUGG   -        UA      AGCCG       C  A
Stem-loop sequence CCAUAUAUGUGUCCAAACAUUUAAUGUAACAGGGUGUAAAAUUUUGCCAGGGAUCAAAUAGCCUUUGUGUAGUAGUGUGGUUCGUGCAUAUAUAUAUAUUGAUCACACAUAUAUAGCCGAAUGCAUAUGAGCCACGUAUGGUUAGGCCCUAUUUAGUUCCCACGCAAAAACUUUUCACCCUGUCACAUCGAAUGUUUGGACACAUGCAUGGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK107289.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *||||||||||||||||||=||||
targets:2132   CUCCAUGCAUGUGUCCAAAUAUUC   2155

1.5 Oryza sativa Japonica Group cDNA clone:002-126-B09, full insert sequence NA coding protein psRNATarget
AK103318.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *||||||||||||||||||=||||
targets:1228   CUCCAUGCAUGUGUCCAAAUAUUC   1251

1.5 Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence NA coding protein psRNATarget
AK105537.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *||||||=|||||||||||||||=
targets:754   CUCCAUGUAUGUGUCCAAACAUUU   777

2.0 Oryza sativa Japonica Group cDNA clone:001-127-H05, full insert sequence NA coding protein psRNATarget
AK065982.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *||||||||||||||||||=|||=
targets:2947   CUCCAUGCAUGUGUCCAAAUAUUU   2970

2.5 Oryza sativa Japonica Group cDNA clone:J013045J05, full insert sequence NA coding protein psRNATarget
AK288837.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *|=||||||||||||=|||||||=
targets:15   CUUCAUGCAUGUGUCUAAACAUUU   38

2.5 Oryza sativa Japonica Group cDNA, clone: J090074D11, full insert sequence NA coding protein psRNATarget
AK120234.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *||=|||||||||||=|||||||=
targets:2578   CUCUAUGCAUGUGUCUAAACAUUU   2601

2.5 Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence NA coding protein psRNATarget
AK121113.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *||||||||||||||||||*||||
targets:2780   CUCCAUGCAUGUGUCCAAAGAUUC   2803

1.5 Oryza sativa Japonica Group cDNA clone:J023073I18, full insert sequence NA coding protein psRNATarget
AK120736.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *||||||||||||||*||||||||
targets:3181   CUCCAUGCAUGUGUCAAAACAUUC   3204

1.5 Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence NA coding protein psRNATarget
AK101996.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *||==||||||||||||||=|||=
targets:1771   CUCUGUGCAUGUGUCCAAAUAUUU   1794

2.5 Oryza sativa Japonica Group cDNA clone:J033079J12, full insert sequence NA coding protein psRNATarget
AK288660.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *|||||*||||||||||||=||||
targets:2492   CUCCAUACAUGUGUCCAAAUAUUC   2515

2.5 Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence NA coding protein psRNATarget
XM_015761897.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *||=||*|||||||||||||||||
targets:74   CUCUAUACAUGUGUCCAAACAUUC   97

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X7, mRNA uncharacterized LOC4350929(LOC4350929) coding protein psRNATarget
XM_015761894.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *||=||*|||||||||||||||||
targets:74   CUCUAUACAUGUGUCCAAACAUUC   97

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X5, mRNA uncharacterized LOC4350929(LOC4350929) coding protein psRNATarget
XM_015761891.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *||=||*|||||||||||||||||
targets:74   CUCUAUACAUGUGUCCAAACAUUC   97

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X2, mRNA uncharacterized LOC4350929(LOC4350929) coding protein psRNATarget
XM_015761890.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *||=||*|||||||||||||||||
targets:74   CUCUAUACAUGUGUCCAAACAUUC   97

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X1, mRNA uncharacterized LOC4350929(LOC4350929) coding protein psRNATarget
AK288279.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *|||||*||||||||||||||||=
targets:5768   CUCCAUACAUGUGUCCAAACAUUU   5791

2.0 Oryza sativa Japonica Group cDNA, clone: J090017N13, full insert sequence NA coding protein psRNATarget
XM_015773694.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  **||||*=|||||||||||||||=
targets:913   CCCCAUAUAUGUGUCCAAACAUUU   936

3.0 PREDICTED: Oryza sativa Japonica Group putative ubiquitin-like-specific protease 1B (LOC9268223), transcript variant X2, mRNA putative ubiquitin-like-specific protease 1B(LOC9268223) coding protein psRNATarget
AK099802.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  **||||*=|||||||||||||||=
targets:919   CCCCAUAUAUGUGUCCAAACAUUU   942

3.0 Oryza sativa Japonica Group cDNA clone:J013098A22, full insert sequence NA coding protein psRNATarget
CT837948.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  *||=||*||||||*||||||||||
targets:662   CUCUAUACAUGUGCCCAAACAUUC   685

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008C05, full insert sequence NA coding protein psRNATarget
XM_015766802.1
ncRNA:24   AAGGUACGUACACAGGUUUGUAAG   1
  ***|=|||=|||||||||||*|||
targets:119   CCGCGUGCGUGUGUCCAAACCUUC   142

2.5 PREDICTED: Oryza sativa Japonica Group verprolin (LOC4324453), mRNA verprolin(LOC4324453) coding protein psRNATarget
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