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BaseInfo

ncRNA ID	novel_osa_miR3188
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:3856461-3856548 [+]
Reference genome	IRGSP-1.0
Source	SRR2040386
Length	23
Mature sequence(if miRNA)	1 - CAUUGCCCAUAUCCAUAUAGAUG - 23
Stem-loop(if miRNA)	--     C      C      GA      G    C    U   U   CAUUG CCAUAU CAUAUA  UGUUAA GAAU UAGA AUA A   ||||| |||||| ||||||  |||||| |||| |||| |||   GUAAC GGUAUA GUAUAU  ACAAUU CUUA AUCU UGU U UC     A      A      AC      A    A    C   G
Stem-loop sequence	CAUUGCCCAUAUCCAUAUAGAUGUUAAGGAAUCUAGAUAUAUAUGUGUCUCUAAAUUCAUUAACACAUAUAUGAAUAUGGACAAUGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT836330.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   ||||||||||*|||||||||||| targets:895   CAUCUAUAUGAAUAUGGGCAAUG   917 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN072K19, full insert sequence	NA	coding protein	psRNATarget
AK241537.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   ||||||||||*|||||||||||| targets:897   CAUCUAUAUGAAUAUGGGCAAUG   919 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065173J04, full insert sequence	NA	coding protein	psRNATarget
XM_015758512.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   |||||||||||||||||*||||| targets:1500   CAUCUAUAUGGAUAUGGACAAUG   1522 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ and MATH domain-containing protein 1-like (LOC107279175), mRNA	BTB/POZ and MATH domain-containing protein 1-like(LOC107279175)	coding protein	psRNATarget
AK288429.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   ||||||||||*|||||||||||| targets:2545   CAUCUAUAUGAAUAUGGGCAAUG   2567 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090033C09, full insert sequence	NA	coding protein	psRNATarget
XM_015786027.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   ||||||||||*|||||||||||| targets:4314   CAUCUAUAUGAAUAUGGGCAAUG   4336 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
XM_015768357.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   |||=|||||*|||=||||||||| targets:1565   CAUUUAUAUAGAUGUGGGCAAUG   1587 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X6, mRNA	protein SRG1(LOC4329022)	coding protein	psRNATarget
XM_015768354.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   |||=|||||*|||=||||||||| targets:1601   CAUUUAUAUAGAUGUGGGCAAUG   1623 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X3, mRNA	protein SRG1(LOC4329022)	coding protein	psRNATarget
XM_015768355.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   |||=|||||*|||=||||||||| targets:1615   CAUUUAUAUAGAUGUGGGCAAUG   1637 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X4, mRNA	protein SRG1(LOC4329022)	coding protein	psRNATarget
AK065581.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   |||=|||||*|||=||||||||| targets:1621   CAUUUAUAUAGAUGUGGGCAAUG   1643 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013034J09, full insert sequence	NA	coding protein	psRNATarget
XM_015768356.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   |||=|||||*|||=||||||||| targets:1649   CAUUUAUAUAGAUGUGGGCAAUG   1671 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X5, mRNA	protein SRG1(LOC4329022)	coding protein	psRNATarget
XM_015768352.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   |||=|||||*|||=||||||||| targets:1659   CAUUUAUAUAGAUGUGGGCAAUG   1681 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X1, mRNA	protein SRG1(LOC4329022)	coding protein	psRNATarget
XM_015768353.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   |||=|||||*|||=||||||||| targets:1671   CAUUUAUAUAGAUGUGGGCAAUG   1693 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X2, mRNA	protein SRG1(LOC4329022)	coding protein	psRNATarget
CT836259.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   =|||||||||*|||||||||||* targets:1016   UAUCUAUAUGAAUAUGGGCAAUA   1038 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115E20, full insert sequence	NA	coding protein	psRNATarget
XM_015794357.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   |||*||||*|*|||||||||||| targets:1389   CAUGUAUACGAAUAUGGGCAAUG   1411 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327949 (LOC4327949), mRNA	uncharacterized LOC4327949(LOC4327949)	coding protein	psRNATarget
XM_015757225.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   |||*|||||**|||||||||||| targets:2379   CAUAUAUAUAAAUAUGGGCAAUG   2401 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g08610 (LOC4348896), mRNA	pentatricopeptide repeat-containing protein At1g08610(LOC4348896)	coding protein	psRNATarget
AK103437.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   |||*|||||**|||||||||||| targets:2451   CAUAUAUAUAAAUAUGGGCAAUG   2473 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033129C05, full insert sequence	NA	coding protein	psRNATarget
AK288528.1	ncRNA:23   GUAGAUAUACCUAUACCCGUUAC   1   *||*|||||*|||||*||||||| targets:706   AAUAUAUAUCGAUAUCGGCAAUG   728 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044L09, full insert sequence	NA	coding protein	psRNATarget