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BaseInfo

ncRNA ID	novel_osa_miR3187
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:13295937-13296060 [+]
Reference genome	IRGSP-1.0
Source	SRR2040386
Length	24
Mature sequence(if miRNA)	101 - UAAAUUUGUCUCGCGGUUUCCAGG - 124
Stem-loop(if miRNA)	--  A                CUU                          -   --U   GCC   UG AAAUCGCGAGACAAAU   UUGAGCCUAAUUAGUCCAUUAUUAGC CAU   AGU   A   || ||||||||||||||||   |||||||||||||||||||||||||| |||   |||   C   AC UUUGGCGCUCUGUUUA   AAUUCGGAUUAAUUAGGUAGUAAUCG GUA   UUA   A GG  C                AAU                          U   CAU   AUA
Stem-loop sequence	UGAAAAUCGCGAGACAAAUCUUUUGAGCCUAAUUAGUCCAUUAUUAGCCAUUAGUGCCACAAUAAUUUACAUGUGCUAAUGAUGGAUUAAUUAGGCUUAAUAAAUUUGUCUCGCGGUUUCCAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288820.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   |||||||||||||||||=|||||* targets:3010   CCUGGAAACCGCGAGACGAAUUUU   3033 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090073D04, full insert sequence	NA	coding protein	psRNATarget
AK288948.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   ||||*||||=|||||||=|||||| targets:436   CCUGUAAACUGCGAGACGAAUUUA   459 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
XM_015773694.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   ||||*||||=|||||||=|||||| targets:750   CCUGUAAACUGCGAGACGAAUUUA   773 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative ubiquitin-like-specific protease 1B (LOC9268223), transcript variant X2, mRNA	putative ubiquitin-like-specific protease 1B(LOC9268223)	coding protein	psRNATarget
AK120234.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   ||||*||||=|||||||=|||||| targets:2414   CCUGUAAACUGCGAGACGAAUUUA   2437 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence	NA	coding protein	psRNATarget
AK099802.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   ||||*||||=|||||||=|||||| targets:756   CCUGUAAACUGCGAGACGAAUUUA   779 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013098A22, full insert sequence	NA	coding protein	psRNATarget
AK120799.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   ||||*||||=|=|||||||||||| targets:3874   CCUGUAAACUGUGAGACAAAUUUA   3897 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023012H18, full insert sequence	NA	coding protein	psRNATarget
XM_015779465.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   ||||*||||=|=|||||||||||| targets:4299   CCUGUAAACUGUGAGACAAAUUUA   4322 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase FLS2 (LOC4337016), mRNA	LRR receptor-like serine/threonine-protein kinase FLS2(LOC4337016)	coding protein	psRNATarget
AK288942.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   ||*||||||=|||||||=|||||| targets:3278   CCAGGAAACUGCGAGACGAAUUUA   3301 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence	NA	coding protein	psRNATarget
AK101107.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   =**||||||=|||||||||||||| targets:1759   UAAGGAAACUGCGAGACAAAUUUA   1782 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033025D23, full insert sequence	NA	coding protein	psRNATarget
AK072341.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   |*||*||||||||||||=|||||| targets:2304   CAUGUAAACCGCGAGACGAAUUUA   2327 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence	NA	coding protein	psRNATarget
AK288540.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   ||||*||||=||||*||||||||| targets:1644   CCUGUAAACUGCGAUACAAAUUUA   1667 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090045N03, full insert sequence	NA	coding protein	psRNATarget
AK289079.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   |=|*||||||*||||||||||||| targets:571   CUUAGAAACCACGAGACAAAUUUA   594 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090095C15, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   =|*|*||||||||||||||||||| targets:456   UCGGUAAACCGCGAGACAAAUUUA   479 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK287702.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   ==||*||||=|||||||=|||||| targets:1264   UUUGUAAACUGCGAGACGAAUUUA   1287 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065131D02, full insert sequence	NA	coding protein	psRNATarget
AK288995.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   ==*|*||||||||||||=|||||| targets:1322   UUAGUAAACCGCGAGACGAAUUUA   1345 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090088A20, full insert sequence	NA	coding protein	psRNATarget
AK120109.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   =|***||||||||||||=|||||| targets:1867   UCAAUAAACCGCGAGACGAAUUUA   1890 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013023O17, full insert sequence	NA	coding protein	psRNATarget
AK067087.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   =|***||||||||||||=|||||| targets:1866   UCAAUAAACCGCGAGACGAAUUUA   1889 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013095A19, full insert sequence	NA	coding protein	psRNATarget
XM_015784558.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   =|***||||=|||||||=|||||| targets:4083   UCAAUAAACUGCGAGACGAAUUUA   4106 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270232 (LOC9270232), mRNA	uncharacterized LOC9270232(LOC9270232)	coding protein	psRNATarget
AK289150.1	ncRNA:24   GGA----CCUUUGGCGCUCUGUUUAAAU   1   =||----|*|||||||||*||||||||| targets:607   UCUAUGAGUAAACCGCGAAACAAAUUUA   634 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090099O03, full insert sequence	NA	coding protein	psRNATarget
CT837715.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   =|*|*||||*|||||||=|||||| targets:1199   UCGGUAAACAGCGAGACGAAUUUA   1222 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI232H20, full insert sequence	NA	coding protein	psRNATarget
CT837714.1	ncRNA:24   GGACCUUUGGCGCUCUGUUUAAAU   1   =|*|*||||*|||||||=|||||| targets:1791   UCGGUAAACAGCGAGACGAAUUUA   1814 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI226D21, full insert sequence	NA	coding protein	psRNATarget
HI404503.1	ncRNA:21   CCUUUGGCGCUCUGUUUAAAU   1   |*|||||*||||||=|||||| targets:1   GUAAACCACGAGACGAAUUUA   21 Target Full Sequence	2.5	Sequence 2628 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236633.1	ncRNA:21   CCUUUGGCGCUCUGUUUAAAU   1   |*|||||*||||||=|||||| targets:1   GUAAACCACGAGACGAAUUUA   21 Target Full Sequence	2.5	Sequence 2628 from Patent EP2985353	NA	coding protein	psRNATarget
JB164964.1	ncRNA:21   CCUUUGGCGCUCUGUUUAAAU   1   |*|||||*||||||=|||||| targets:1   GUAAACCACGAGACGAAUUUA   21 Target Full Sequence	2.5	Sequence 2628 from Patent EP2559767	NA	coding protein	psRNATarget