ncRNA ID | novel_osa_miR3185 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr2:11234972-11235142 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR2040386;SRR2040395;SRR2040410;SRR2857729;SRR3123650;SRR1738239 |
Length | 24 |
Mature sequence(if miRNA) | 148 - UUGUAGAUUCCGCCUGUAAACUGC - 171 |
Stem-loop(if miRNA) |
----AG    A                    G                                              -   UU UG       UGCG GUGGAAUCUAUAAUUUGUUU GUUGUUAGAUUACGUUUAAUACUUUAAAUGUGUGUCCGUAUAUCCG UAU  U  C       |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||  |       AUGU CGCCUUAGAUGUUAAACAAA CAAUAAUCUGAUGCAAAUUAUGAAGUUUACACACAGGCAUAUAGGC AUA  G  C CGUCAA    C                    A                                              U   CU UG |
Stem-loop sequence | AGUGCGAGUGGAAUCUAUAAUUUGUUUGGUUGUUAGAUUACGUUUAAUACUUUAAAUGUGUGUCCGUAUAUCCGUAUUUUUGCCGUGUCAUAUCGGAUAUACGGACACACAUUUGAAGUAUUAAACGUAGUCUAAUAACAAAACAAAUUGUAGAUUCCGCCUGUAAACUGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK288682.1 |
|
1.5 | Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence | NA | coding protein | psRNATarget |