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BaseInfo

ncRNA ID novel_osa_miR3185
Species Oryza sativa
Class miRNA
Genome position Chr2:11234972-11235142 [+]
Reference genome IRGSP-1.0
Source SRR2040386;SRR2040395;SRR2040410;SRR2857729;SRR3123650;SRR1738239
Length 24
Mature sequence(if miRNA) 148 - UUGUAGAUUCCGCCUGUAAACUGC - 171
Stem-loop(if miRNA) ----AG    A                    G                                              -   UU UG
      UGCG GUGGAAUCUAUAAUUUGUUU GUUGUUAGAUUACGUUUAAUACUUUAAAUGUGUGUCCGUAUAUCCG UAU  U  C
      |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||  |
      AUGU CGCCUUAGAUGUUAAACAAA CAAUAAUCUGAUGCAAAUUAUGAAGUUUACACACAGGCAUAUAGGC AUA  G  C
CGUCAA    C                    A                                              U   CU UG
Stem-loop sequence AGUGCGAGUGGAAUCUAUAAUUUGUUUGGUUGUUAGAUUACGUUUAAUACUUUAAAUGUGUGUCCGUAUAUCCGUAUUUUUGCCGUGUCAUAUCGGAUAUACGGACACACAUUUGAAGUAUUAAACGUAGUCUAAUAACAAAACAAAUUGUAGAUUCCGCCUGUAAACUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288682.1
ncRNA:24   CGUCAAAUGUCCGCCUUAGAUGUU   1
  |||||||||||||||||||||=||
targets:450   GCAGUUUACAGGCGGAAUCUAUAA   473

1.5 Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence NA coding protein psRNATarget