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BaseInfo

ncRNA ID	novel_osa_miR3181
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:18668614-18668708 [-]
Reference genome	IRGSP-1.0
Source	SRR2040386
Length	21
Mature sequence(if miRNA)	75 - UCCUUGCGGCCGGCCGGCUUA - 95
Stem-loop(if miRNA)	--              C     ACCCUCCCUCCUCCUCCCCUU    UU  -C     C   UCCUUGCGGCCGGC GGCUU                     UGCC  GC  GCCGC U   |||||||||||||| |||||                     ||||  ||  |||||   AGGAACGCCGGCCG CCGAA                     ACGG  UG  CGGCG A UC              A     ---------------------    -C  CU     A
Stem-loop sequence	UCCUUGCGGCCGGCCGGCUUACCCUCCCUCCUCCUCCCCUUUGCCUUGCCGCCGCCUAAGCGGCUCGUCGGCAAAGCCAGCCGGCCGCAAGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK105213.1	ncRNA:21   AUUCGGCCGGCCGGCGUUCCU   1   ||||||||||||||||||||| targets:425   UAAGCCGGCCGGCCGCAAGGA   445 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:001-109-F05, full insert sequence	NA	coding protein	psRNATarget
AK071570.1	ncRNA:21   AUUCGGCCGGCCGGCGUUCCU   1   *|||||||||||||*|||||| targets:93   AAAGCCGGCCGGCCACAAGGA   113 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023107F12, full insert sequence	NA	coding protein	psRNATarget
XM_015779351.1	ncRNA:21   AUUCGGCCGGCCGGCGUUCCU   1   *||||||*||||||*|||||| targets:2507   AAAGCCGACCGGCCACAAGGA   2527 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cellulose synthase-like protein H2 (LOC4335860), mRNA	cellulose synthase-like protein H2(LOC4335860)	coding protein	psRNATarget
XM_015795420.1	ncRNA:21   AUUCGGCCGGCCGGCGUUCCU   1   *||||||**|||||||||||| targets:103   AAAGCCGCGCGGCCGCAAGGA   123 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269424 (LOC9269424), mRNA	uncharacterized LOC9269424(LOC9269424)	coding protein	psRNATarget
AK241424.1	ncRNA:21   AUUCGGCCGGCCGGCGUUCCU   1   *||||||*||||||*|||||| targets:131   AAAGCCGACCGGCCACAAGGA   151 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065161L02, full insert sequence	NA	coding protein	psRNATarget
AK110172.1	ncRNA:21   AUUCGGCCGGCCGGCGUUCCU   1   *=*|||*|||||||||||||| targets:2592   GGUGCCAGCCGGCCGCAAGGA   2612 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-161-G07, full insert sequence	NA	coding protein	psRNATarget