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BaseInfo

ncRNA ID	novel_osa_miR3180
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:28909083-28909157 [-]
Reference genome	IRGSP-1.0
Source	SRR2040386
Length	24
Mature sequence(if miRNA)	1 - ACACAUUGCGUCUUGGAGUCCGCG - 24
Stem-loop(if miRNA)	--          A  A   A        -GACAGG  G   CGGACUCCAA AC CAA GUGUGUAU       UG G   |||||||||| || ||| ||||||||       ||   GCCUGAGGUU UG GUU CACACAUA       AC A GC          C  C   A        AUUAUAG  C
Stem-loop sequence	CGGACUCCAAAACACAAAGUGUGUAUGACAGGUGGGACCAGAUAUUAAUACACACAUUGCGUCUUGGAGUCCGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT834601.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*||||||||||||||||=||||| targets:895   CACGGACUCCAAGACGCAGUGUGU   918 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107E15, full insert sequence	NA	coding protein	psRNATarget
AK067670.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*||||||||||||||||=||||| targets:833   CACGGACUCCAAGACGCAGUGUGU   856 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013120E23, full insert sequence	NA	coding protein	psRNATarget
AK288963.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |||||=|||||||||*|||||||| targets:840   CGCGGGCUCCAAGACACAAUGUGU   863 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090084H09, full insert sequence	NA	coding protein	psRNATarget
GQ463475.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*|||||||=||||||=||||||| targets:898   CACGGACUCUAAGACGUAAUGUGU   921 Target Full Sequence	2.5	Oryza sativa Japonica Group cultivar Katy Pi-ta variant KPt.9 (Pi-ta) mRNA, partial sequence; alternatively spliced	NA	coding protein	psRNATarget
AK241209.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*=|||||||||||||=||||||| targets:921   CAUGGACUCCAAGACGUAAUGUGU   944 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065122J15, full insert sequence	NA	coding protein	psRNATarget
GQ463474.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*|||||||=||||||=||||||| targets:6   CACGGACUCUAAGACGUAAUGUGU   29 Target Full Sequence	2.5	Oryza sativa Japonica Group cultivar Katy Pi-ta variant KPt.8 (Pi-ta) mRNA, complete cds, alternatively spliced	NA	coding protein	psRNATarget
AK288396.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*|||||||=||||||=||||||| targets:1440   CACGGACUCUAAGACGUAAUGUGU   1463 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090027N23, full insert sequence	NA	coding protein	psRNATarget
AK107762.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*||||||=*|||||||||||||| targets:695   CACGGACUUAAAGACGCAAUGUGU   718 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-133-A10, full insert sequence	NA	coding protein	psRNATarget
XM_015785274.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*||||||=*|||||||||||||| targets:1144   CACGGACUUAAAGACGCAAUGUGU   1167 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281149 (LOC107281149), transcript variant X1, mRNA	uncharacterized LOC107281149(LOC107281149)	coding protein	psRNATarget
XM_015782352.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*||*|||||||||||||=||||| targets:1138   CACGAACUCCAAGACGCAGUGUGU   1161 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group universal stress protein A-like protein (LOC4338972), transcript variant X1, mRNA	universal stress protein A-like protein(LOC4338972)	coding protein	psRNATarget
AK073600.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*||*|||||||||||||=||||| targets:1046   CACGAACUCCAAGACGCAGUGUGU   1069 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033048I03, full insert sequence	NA	coding protein	psRNATarget
AK067261.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*|*||=||||||||||||||||| targets:1675   CACAGAUUCCAAGACGCAAUGUGU   1698 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013096G06, full insert sequence	NA	coding protein	psRNATarget
AK240642.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*||*||||=||||||=||||||| targets:1633   CACGAACUCUAAGACGUAAUGUGU   1656 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J023002G08, full insert sequence	NA	coding protein	psRNATarget
AK068992.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*||*||||=||||||=||||||| targets:1633   CACGAACUCUAAGACGUAAUGUGU   1656 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023002G08, full insert sequence	NA	coding protein	psRNATarget
XM_015786527.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*||*||||=||||||=||||||| targets:1644   CACGAACUCUAAGACGUAAUGUGU   1667 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 (LOC4340625), mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5(LOC4340625)	coding protein	psRNATarget
XM_015765442.1	ncRNA:24   GCGCCUGAGGUUCUGCGUUACACA   1   |*||||||*||||||*|||||||| targets:2456   CACGGACUACAAGACACAAUGUGU   2479 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein GPR107-like (LOC107278575), mRNA	protein GPR107-like(LOC107278575)	coding protein	psRNATarget