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BaseInfo

ncRNA ID novel_osa_miR3178
Species Oryza sativa
Class miRNA
Genome position Chr1:41405066-41405249 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1555749;SRR1556016;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - ACAUGUGAGAAAAAGUCAACGGCA - 24
Stem-loop(if miRNA) --                           C    A                  C    -UU    UUUAUUUUGUUAUGAGGUGUUUUAUCA
  CCGUUGACUUUUUCUCACAUGUUUGAC AUUC UCUUAUUCAAAAAAUUUA GUAA   AUAA                           C
  ||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||   ||||                           U
  GGCAACUGAAAAAGAGUGUACAAACUG UAAG AGAAUAAGUUUUUUAAAU CGUU   AUAU                           C
AC                           A    C                  A    UAU    UCUAUAUUUAGUGUGAAUUUCAUGAUA
Stem-loop sequence CCGUUGACUUUUUCUCACAUGUUUGACCAUUCAUCUUAUUCAAAAAAUUUACGUAAUUAUAAUUUAUUUUGUUAUGAGGUGUUUUAUCACUCAUAGUACUUUAAGUGUGAUUUAUAUCUUAUAUAUUUGCAUAAAUUUUUUGAAUAAGACGAAUAGUCAAACAUGUGAGAAAAAGUCAACGGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288179.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *|||||||||||||||||||||||
targets:3594   CGCCGUUGACUUUUUCUCACAUGU   3617

0.0 Oryza sativa Japonica Group cDNA, clone: J090005B04, full insert sequence NA coding protein psRNATarget
AK068475.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *|||||||||||||||||||||||
targets:2173   CGCCGUUGACUUUUUCUCACAUGU   2196

0.0 Oryza sativa Japonica Group cDNA clone:J013152H07, full insert sequence NA coding protein psRNATarget
AK288827.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *|||||||||||||||||||||||
targets:1243   CGCCGUUGACUUUUUCUCACAUGU   1266

0.0 Oryza sativa Japonica Group cDNA, clone: J090073J08, full insert sequence NA coding protein psRNATarget
XM_015766756.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *|||||||||||||||||||||||
targets:1831   CGCCGUUGACUUUUUCUCACAUGU   1854

0.0 PREDICTED: Oryza sativa Japonica Group probable glucuronosyltransferase Os01g0926600 (LOC4327242), mRNA probable glucuronosyltransferase Os01g0926600(LOC4327242) coding protein psRNATarget
CT834818.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||||||=||||
targets:2275   CGCCGUUGACUUUUUCUCAUAUGU   2298

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228H20, full insert sequence NA coding protein psRNATarget
CT837513.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||||=||||||
targets:477   CGCCGUUGACUUUUUCUUACAUGU   500

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA001P06, full insert sequence NA coding protein psRNATarget
XM_015783321.1
ncRNA:24   AC---GGCAACUGAAAAAGAGUGUACA   1
  ||---||||||||||||||||||||||
targets:1671   UGACACCGUUGACUUUUUCUCACAUGU   1697

0.0 PREDICTED: Oryza sativa Japonica Group anthocyanidin 5,3-O-glucosyltransferase (LOC4339395), mRNA anthocyanidin 5,3-O-glucosyltransferase(LOC4339395) coding protein psRNATarget
CT830548.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *|=||||||||||||||||=||||
targets:1816   CGUCGUUGACUUUUUCUCAUAUGU   1839

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA037O15, full insert sequence NA coding protein psRNATarget
AK288409.1
ncRNA:24   ACGGCAACUGAAAAA-GAGUGUACA   1
  *||||||||||||||-|||||||||
targets:585   CGCCGUUGACUUUUUUCUCACAUGU   609

3.0 Oryza sativa Japonica Group cDNA, clone: J090030J15, full insert sequence NA coding protein psRNATarget
XM_015776802.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||||||||*||
targets:1987   CGCCGUUGACUUUUUCUCACACGU   2010

1.5 PREDICTED: Oryza sativa Japonica Group xyloglucan galactosyltransferase KATAMARI1 homolog (LOC4331596), transcript variant X1, mRNA xyloglucan galactosyltransferase KATAMARI1 homolog(LOC4331596) coding protein psRNATarget
XM_015776803.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||||||||*||
targets:1564   CGCCGUUGACUUUUUCUCACACGU   1587

1.5 PREDICTED: Oryza sativa Japonica Group xyloglucan galactosyltransferase KATAMARI1 homolog (LOC4331596), transcript variant X2, mRNA xyloglucan galactosyltransferase KATAMARI1 homolog(LOC4331596) coding protein psRNATarget
AK288773.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *|||||||||||||||*|||||||
targets:3737   CGCCGUUGACUUUUUCGCACAUGU   3760

1.5 Oryza sativa Japonica Group cDNA, clone: J090068D07, full insert sequence NA coding protein psRNATarget
AK288309.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||||||*||||
targets:883   CGCCGUUGACUUUUUCUCAAAUGU   906

1.5 Oryza sativa Japonica Group cDNA, clone: J090020H08, full insert sequence NA coding protein psRNATarget
XM_015786078.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||*||||||||
targets:1827   CGCCGUUGACUUUUUAUCACAUGU   1850

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X10, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786068.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||*||||||||
targets:1744   CGCCGUUGACUUUUUAUCACAUGU   1767

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X1, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786071.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||*||||||||
targets:1717   CGCCGUUGACUUUUUAUCACAUGU   1740

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X3, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786073.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||*||||||||
targets:1600   CGCCGUUGACUUUUUAUCACAUGU   1623

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X5, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786074.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||*||||||||
targets:1596   CGCCGUUGACUUUUUAUCACAUGU   1619

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X6, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786075.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||*||||||||
targets:1596   CGCCGUUGACUUUUUAUCACAUGU   1619

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X7, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786077.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||*||||||||
targets:1589   CGCCGUUGACUUUUUAUCACAUGU   1612

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X9, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786072.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||*||||||||
targets:1513   CGCCGUUGACUUUUUAUCACAUGU   1536

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X4, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786076.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||*||||||||
targets:1464   CGCCGUUGACUUUUUAUCACAUGU   1487

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X8, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015795035.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||*||||||||||||||||
targets:1066   CGCCGUUAACUUUUUCUCACAUGU   1089

1.0 PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 10 (LOC4325933), transcript variant X1, mRNA calcineurin B-like protein 10(LOC4325933) coding protein psRNATarget
AK288135.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *||||||||||||||*||||||||
targets:397   CGCCGUUGACUUUUUAUCACAUGU   420

1.5 Oryza sativa Japonica Group cDNA, clone: J080305D01, full insert sequence NA coding protein psRNATarget
AK289053.1
ncRNA:24   AC---GGCAACUGAAAAAGAGUGUACA   1
  ||---||||||==||||||||||||||
targets:612   UGACACCGUUGGUUUUUUCUCACAUGU   638

2.0 Oryza sativa Japonica Group cDNA, clone: J090092P21, full insert sequence NA coding protein psRNATarget
CT832797.1
ncRNA:24   AC---GGCAACUGAAAAAGAGUGUACA   1
  ||---|||||||=|||||||||=||||
targets:607   UGACACCGUUGAUUUUUUCUCAUAUGU   633

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008N07, full insert sequence NA coding protein psRNATarget
AK288852.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  ||||*||||||||||*||||||||
targets:4626   UGCCAUUGACUUUUUGUCACAUGU   4649

1.5 Oryza sativa Japonica Group cDNA, clone: J090075M07, full insert sequence NA coding protein psRNATarget
AK288459.1
ncRNA:24   AC-G-GCAACUGAAAAAGAGUGUACA   1
  ||-|-||||||||||||*||||||||
targets:486   UGACACGUUGACUUUUUAUCACAUGU   511

1.5 Oryza sativa Japonica Group cDNA, clone: J090035G07, full insert sequence NA coding protein psRNATarget
AK073459.1
ncRNA:24   ACGGCAACUGAAAAAGAGUGUACA   1
  *|||*||||||||||*||||||||
targets:870   CGCCAUUGACUUUUUAUCACAUGU   893

1.5 Oryza sativa Japonica Group cDNA clone:J033040L10, full insert sequence NA coding protein psRNATarget
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