Search result

BaseInfo

ncRNA ID	novel_osa_miR3176
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:3577263-3577435 [+]
Reference genome	IRGSP-1.0
Source	SRR2040386;SRR2040395;SRR2040401;SRR2040407
Length	24
Mature sequence(if miRNA)	1 - UUUUCGUAUCCAACGUUUGACUGU - 24
Stem-loop(if miRNA)	--       A                 -       A     -----------------UUUUUU  UAAUUAGUAUUUUCAUUGUUGUUAGAUGA   UUUUCGU UCCAACGUUUGACUGUC GUCUUAU UGAAA                       UA                             U   ||||||| ||||||||||||||||| ||||||| |||||                       ||                             A   AAAAGUA AGGUUGCAAACUGGCAG CAGAAUA ACUUU                       CU                             A UC       C                 G       A     UUUUAUACUUUUUUUUUAUUUUU  GUUCAGUGCGUAUUUCAUAAUUAGUACAA
Stem-loop sequence	UUUUCGUAUCCAACGUUUGACUGUCGUCUUAUAUGAAAUUUUUUUAUAAUUAGUAUUUUCAUUGUUGUUAGAUGAUAAAACAUGAUUAAUACUUUAUGCGUGACUUGUCUUUUUAUUUUUUUUUCAUAUUUUUUUCAAAUAAGACGGACGGUCAAACGUUGGACAUGAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289090.1	ncRNA:24   UGUCAGUUUGCAACCUAUGCUUUU   1   ||=|||||||||||||||=||||| targets:994   ACGGUCAAACGUUGGAUAUGAAAA   1017 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090095N19, full insert sequence	NA	coding protein	psRNATarget
AK288706.1	ncRNA:24   UGUCAGUUUGCAACCUAUGCUUUU   1   ||=|||||||||||||*||||||| targets:3077   ACGGUCAAACGUUGGACACGAAAA   3100 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090061L24, full insert sequence	NA	coding protein	psRNATarget
JB164349.1	ncRNA:24   UGUCAGUUUGCAACCUAUGCUUUU   1   |||*|=||||||||||||||=||| targets:117   ACAAUUAAACGUUGGAUACGGAAA   140 Target Full Sequence	2.5	Sequence 2013 from Patent EP2559767	NA	coding protein	psRNATarget
HI403888.1	ncRNA:24   UGUCAGUUUGCAACCUAUGCUUUU   1   |||*|=||||||||||||||=||| targets:117   ACAAUUAAACGUUGGAUACGGAAA   140 Target Full Sequence	2.5	Sequence 2013 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236018.1	ncRNA:24   UGUCAGUUUGCAACCUAUGCUUUU   1   |||*|=||||||||||||||=||| targets:117   ACAAUUAAACGUUGGAUACGGAAA   140 Target Full Sequence	2.5	Sequence 2013 from Patent EP2985353	NA	coding protein	psRNATarget