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BaseInfo

ncRNA ID novel_osa_miR3174
Species Oryza sativa
Class miRNA
Genome position Chr1:2519348-2519585 [+]
Reference genome IRGSP-1.0
Source SRR2040386
Length 24
Mature sequence(if miRNA) 1 - UUUCAUAUUAUAAGUUGUUUGACU - 24
Stem-loop(if miRNA) --UUU                              G C     UUG    A                     -UUU   ---------      ---     ---       UU   U    UUAAA
     CAUAUUAUAAGUUGUUUGACUUUUUUUCUA U AAAUU   UUAA UUUGAUUAAGUUUAUAGAAAA    UAG         CAACAU   AUAAA   AUAUUAA  UAU UUCA     U
     |||||||||||||||||||||||||||||| | |||||   |||| |||||||||||||||||||||    |||         ||||||   |||||   |||||||  ||| ||||     C
     GUAUAAUAUUCAACAAGCUGAAAAAAAGAU A UUUGA   AGUU AAACUAGUUUAAAUAUCUUUU    AUC         GUUGUG   UGUUU   UAUAGUU  AUA AAGU     U
GCAAU                              G A     -UA    C                     UUAU   AUCAUAAUA      UUU     GUA       UU   U    UACAA
Stem-loop sequence UUUCAUAUUAUAAGUUGUUUGACUUUUUUUCUAGUCAAAUUUUGUUAAAUUUGAUUAAGUUUAUAGAAAAUUUUAGCAACAUAUAAAAUAUUAAUUUAUUUUCAUUAAAUCUAACAUUGAAUAUAUUUUGAUAUAUGUUUGUUUUGUGUUGAUAAUACUACUAUAUUUUUUCUAUAAAUUUGAUCAAACUUGAAUAGUUUAAGUAGAAAAAAAGUCGAACAACUUAUAAUAUGUAACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015768860.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  ||||||||||||||||||||||||
targets:1499   AGUCAAACAACUUAUAAUAUGAAA   1522

0.0 PREDICTED: Oryza sativa Japonica Group exopolygalacturonase (LOC4328617), mRNA exopolygalacturonase(LOC4328617) coding protein psRNATarget
XM_015795843.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  |||||||==|||||||||||||||
targets:2833   AGUCAAAUGACUUAUAAUAUGAAA   2856

2.0 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g56310 (LOC4347034), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At5g56310(LOC4347034) coding protein psRNATarget
AK121032.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  |||=||||=|||||||||||||||
targets:2108   AGUUAAACGACUUAUAAUAUGAAA   2131

1.0 Oryza sativa Japonica Group cDNA clone:J023050J15, full insert sequence NA coding protein psRNATarget
AK109666.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  ||||||||||||||||||||*|||
targets:1295   AGUCAAACAACUUAUAAUAUAAAA   1318

1.5 Oryza sativa Japonica Group cDNA clone:002-145-A04, full insert sequence NA coding protein psRNATarget
AK289190.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  ||||||||||||||||||||*|||
targets:1252   AGUCAAACAACUUAUAAUAUAAAA   1275

1.5 Oryza sativa Japonica Group cDNA, clone: J100038P15, full insert sequence NA coding protein psRNATarget
AK288626.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  |*||||||||||||||||||||||
targets:1753   AAUCAAACAACUUAUAAUAUGAAA   1776

0.0 Oryza sativa Japonica Group cDNA, clone: J090054N03, full insert sequence NA coding protein psRNATarget
XM_015778833.1
ncRNA:24   UCAGUUU-GUUGAAUAUUAUACUUU   1
  |||||||-|=|||||||||||||||
targets:1688   AGUCAAAACGACUUAUAAUAUGAAA   1712

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280553 (LOC107280553), transcript variant X1, mRNA uncharacterized LOC107280553(LOC107280553) coding protein psRNATarget
AK073029.1
ncRNA:24   UCAGUUU-GUUGAAUAUUAUACUUU   1
  |||||||-|=|||||||||||||||
targets:1781   AGUCAAAGCGACUUAUAAUAUGAAA   1805

3.0 Oryza sativa Japonica Group cDNA clone:J023146M03, full insert sequence NA coding protein psRNATarget
AK064579.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  ||||||||=|||||||||||*|||
targets:859   AGUCAAACGACUUAUAAUAUAAAA   882

2.5 Oryza sativa Japonica Group cDNA clone:002-112-E11, full insert sequence NA coding protein psRNATarget
AK063309.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  |*||||||=|||||||||||||||
targets:1145   AAUCAAACGACUUAUAAUAUGAAA   1168

1.0 Oryza sativa Japonica Group cDNA clone:001-113-G01, full insert sequence NA coding protein psRNATarget
AK120387.1
ncRNA:24   UCAGUUU-GUUGAAUAUUAUACUUU   1
  ||||=||-|=|||||||||||||||
targets:531   AGUCGAAGCGACUUAUAAUAUGAAA   555

3.0 Oryza sativa Japonica Group cDNA clone:J013073J05, full insert sequence NA coding protein psRNATarget
AK288227.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  |*|||||===||||||||||||||
targets:2843   ACUCAAAUGGCUUAUAAUAUGAAA   2866

3.0 Oryza sativa Japonica Group cDNA, clone: J090012F16, full insert sequence NA coding protein psRNATarget
CT829116.1
ncRNA:24   UCAGUUU-GUUGAAUAUUAUACUUU   1
  |||*|||-|=|||||||||||||||
targets:844   AGUGAAAGCGACUUAUAAUAUGAAA   868

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA127P13, full insert sequence NA coding protein psRNATarget
AK068835.1
ncRNA:24   UCAGUUU-GUUGAAUAUUAUACUUU   1
  |*|||||-|=|||||||||||||||
targets:1106   AAUCAAAGCGACUUAUAAUAUGAAA   1130

3.0 Oryza sativa Japonica Group cDNA clone:J013158G20, full insert sequence NA coding protein psRNATarget
XM_015784699.1
ncRNA:24   UCA--GUUUGUUGAAUAUUAUACUUU   1
  |||--|||||=|||||||||||*|||
targets:2237   AGUUUCAAACGACUUAUAAUAUUAAA   2262

2.5 PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 3.1-like (LOC107276905), mRNA protein NRT1/ PTR FAMILY 3.1-like(LOC107276905) coding protein psRNATarget
CT835543.1
ncRNA:24   UCAGUUU-GUUGAAUAUUAUACUUU   1
  *||||||-|*|||||||||||||||
targets:731   UGUCAAAACUACUUAUAAUAUGAAA   755

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220L16, full insert sequence NA coding protein psRNATarget
XM_015764328.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  |||--|||=|||||||||||||||
targets:47   AGU--AACGACUUAUAAUAUGAAA   68

1.0 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase-like 14 (LOC4352691), transcript variant X1, mRNA wall-associated receptor kinase-like 14(LOC4352691) coding protein psRNATarget
XM_015765055.1
ncRNA:24   UCAGUUU-GUUGAAUAUUAUACUUU   1
  *||||||-|*|||||||||||||||
targets:2110   UGUCAAAACUACUUAUAAUAUGAAA   2134

3.0 PREDICTED: Oryza sativa Japonica Group probable mixed-linked glucan synthase 7 (LOC9266650), transcript variant X1, mRNA probable mixed-linked glucan synthase 7(LOC9266650) coding protein psRNATarget
CT828477.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  |*|*|||=||||||||||=|||||
targets:948   AAUAAAAUAACUUAUAAUGUGAAA   971

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110B14, full insert sequence NA coding protein psRNATarget
AK242848.1
ncRNA:24   UCAGUUU-GUUGAAUAUUAUACUUU   1
  |*|||||-|*|||||||||||||||
targets:3813   AAUCAAAUCUACUUAUAAUAUGAAA   3837

3.0 Oryza sativa Japonica Group cDNA, clone: J090072L17, full insert sequence NA coding protein psRNATarget
XM_015758786.1
ncRNA:24   UCAG--UUUGUUGAAUAUUAUACUUU   1
  ||*|--||||=*||||||||||||||
targets:757   AGGCCAAAACGUCUUAUAAUAUGAAA   782

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348279 (LOC4348279), transcript variant X2, mRNA uncharacterized LOC4348279(LOC4348279) coding protein psRNATarget
XM_015756307.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  **|*||||||||||||||||*|||
targets:44   CUUAAAACAACUUAUAAUAUAAAA   67

1.5 PREDICTED: Oryza sativa Japonica Group purine permease 3 (LOC4347321), transcript variant X2, mRNA purine permease 3(LOC4347321) coding protein psRNATarget
AK064956.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  |**=||||=|||||||||||*|||
targets:1524   AAAUAAACGACUUAUAAUAUAAAA   1547

2.5 Oryza sativa Japonica Group cDNA clone:J013001A06, full insert sequence NA coding protein psRNATarget
AK287628.1
ncRNA:24   UCAG-----UUUGUUGAAUAUUAUACUUU   1
  |||=-----||*|=||||||||||||||*
targets:2656   AGUUUGACUAAUCGACUUAUAAUAUGAAU   2684

3.0 Oryza sativa Japonica Group cDNA, clone: J065071H01, full insert sequence NA coding protein psRNATarget
AK240835.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  *|*|*|===|||||||||||||||
targets:692   UGACUAGUGACUUAUAAUAUGAAA   715

3.0 Oryza sativa Japonica Group cDNA, clone: J065015M22, full insert sequence NA coding protein psRNATarget
CT828685.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  |||*=||*=*||||||||||||||
targets:1377   AGUAGAAAGUCUUAUAAUAUGAAA   1400

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124K24, full insert sequence NA coding protein psRNATarget
XM_015771202.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  =*|*=|||=|||||||*|||||||
targets:106   GCUAGAACGACUUAUAUUAUGAAA   129

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278672 (LOC107278672), transcript variant X1, mRNA uncharacterized LOC107278672(LOC107278672) coding protein psRNATarget
XM_015771203.1
ncRNA:24   UCAGUUUGUUGAAUAUUAUACUUU   1
  =*|*=|||=|||||||*|||||||
targets:106   GCUAGAACGACUUAUAUUAUGAAA   129

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278672 (LOC107278672), transcript variant X2, mRNA uncharacterized LOC107278672(LOC107278672) coding protein psRNATarget
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