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BaseInfo

ncRNA ID	novel_osa_miR3170
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:21182649-21182805 [-]
Reference genome	IRGSP-1.0
Source	SRR2040386
Length	21
Mature sequence(if miRNA)	1 - UGAGAUUUGGUAUGAAUGUAU - 21
Stem-loop(if miRNA)	--               A               A   C             AAA           GA          AAC   ACAUUCAUACCGAAU UCAAGUCCAAACUCA CUU AUUUGAGAGAAAA   GAGACAAAUUU  GGUGAAUAGU   A   ||||||||||||||| ||||||||||||||| ||| |||||||||||||   |||||||||||  ||||||||||   UGUAAGUAUGGUUUA AGUUCGGGUUUGAGU GAA UAAACUUUCUUUU   UUUUGUUUAAA  CCACUUAUCA   G UA               G               A   A             ---           GC          CAA
Stem-loop sequence	ACAUUCAUACCGAAUAUCAAGUCCAAACUCAACUUCAUUUGAGAGAAAAAAAGAGACAAAUUUGAGGUGAAUAGUAACAGAACACUAUUCACCCGAAAUUUGUUUUUUUUCUUUCAAAUAAAGAUGAGUUUGGGCUUGAGAUUUGGUAUGAAUGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403798.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||||||||||| targets:21   AUACAUUCAUACCAAAUCUCA   41 Target Full Sequence	0.0	Sequence 1923 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235928.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||||||||||| targets:21   AUACAUUCAUACCAAAUCUCA   41 Target Full Sequence	0.0	Sequence 1923 from Patent EP2985353	NA	coding protein	psRNATarget
JB164259.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||||||||||| targets:21   AUACAUUCAUACCAAAUCUCA   41 Target Full Sequence	0.0	Sequence 1923 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236177.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||||||||||| targets:21   AUACAUUCAUACCAAAUCUCA   41 Target Full Sequence	0.0	Sequence 2172 from Patent EP2985353	NA	coding protein	psRNATarget
JB164508.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||||||||||| targets:21   AUACAUUCAUACCAAAUCUCA   41 Target Full Sequence	0.0	Sequence 2172 from Patent EP2559767	NA	coding protein	psRNATarget
HI404047.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||||||||||| targets:21   AUACAUUCAUACCAAAUCUCA   41 Target Full Sequence	0.0	Sequence 2172 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236280.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   |||||||||||=||||||||| targets:21   AUACAUUCAUAUCAAAUCUCA   41 Target Full Sequence	1.5	Sequence 2275 from Patent EP2985353	NA	coding protein	psRNATarget
HI404150.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   |||||||||||=||||||||| targets:21   AUACAUUCAUAUCAAAUCUCA   41 Target Full Sequence	1.5	Sequence 2275 from Patent EP2074227	NA	coding protein	psRNATarget
JB164611.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   |||||||||||=||||||||| targets:21   AUACAUUCAUAUCAAAUCUCA   41 Target Full Sequence	1.5	Sequence 2275 from Patent EP2559767	NA	coding protein	psRNATarget
HI403625.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||||=|||||| targets:21   AUACAUUCAUACCAGAUCUCA   41 Target Full Sequence	1.5	Sequence 1750 from Patent EP2074227	NA	coding protein	psRNATarget
JB164086.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||||=|||||| targets:21   AUACAUUCAUACCAGAUCUCA   41 Target Full Sequence	1.5	Sequence 1750 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235755.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||||=|||||| targets:21   AUACAUUCAUACCAGAUCUCA   41 Target Full Sequence	1.5	Sequence 1750 from Patent EP2985353	NA	coding protein	psRNATarget
CT835929.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   |||||||||||||||||||=| targets:559   AUACAUUCAUACCAAAUCUUA   579 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA005B17, full insert sequence	NA	coding protein	psRNATarget
HI404485.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   |||||||||||*||||||||| targets:21   AUACAUUCAUAGCAAAUCUCA   41 Target Full Sequence	1.5	Sequence 2610 from Patent EP2074227	NA	coding protein	psRNATarget
JB164946.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   |||||||||||*||||||||| targets:21   AUACAUUCAUAGCAAAUCUCA   41 Target Full Sequence	1.5	Sequence 2610 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236615.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   |||||||||||*||||||||| targets:21   AUACAUUCAUAGCAAAUCUCA   41 Target Full Sequence	1.5	Sequence 2610 from Patent EP2985353	NA	coding protein	psRNATarget
CT832946.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   ||||||*||||||||||*||| targets:803   AUACAUCCAUACCAAAUGUCA   823 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240N02, full insert sequence	NA	coding protein	psRNATarget
AK065400.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   ||||||*||||||||||*||| targets:859   AUACAUCCAUACCAAAUGUCA   879 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013020I02, full insert sequence	NA	coding protein	psRNATarget
AK288500.1	ncRNA:21   UAUGUAAGUAUGGUUUAGAGU   1   ||||||*|||||*|||||||| targets:1439   AUACAUGCAUACAAAAUCUCA   1459 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090041C18, full insert sequence	NA	coding protein	psRNATarget