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BaseInfo

ncRNA ID	novel_osa_miR3167
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:25384330-25384441 [-]
Reference genome	IRGSP-1.0
Source	SRR2040385
Length	24
Mature sequence(if miRNA)	89 - UCGCGAGAUAAAUCUUUUGAGCCU - 112
Stem-loop(if miRNA)	--   C    UA       U  GC       A     C     -  CAU    -  U   UCG GAGA  AAUCUUU GA  CUAAUUA UCUGU AUUAG CA   GUGG AU A   ||| ||||  ||||||| ||  ||||||| ||||| ||||| ||   |||| ||   AGC CUCU  UUAGAAA CU  GAUUAAU AGGUA UAAUC GU   CACC UA C UU   A    GC       C  UA       C     C     A  AUU    A  U
Stem-loop sequence	UCGCGAGAUAAAUCUUUUGAGCCUAAUUAAUCUGUCAUUAGCACAUGUGGAUUACUAUACCACUUAUGACUAAUCAUGGACUAAUUAGAUUCCAAAGAUUCGUCUCACGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288192.1	ncRNA:24   UCCGAGUUUUCUAAAUAGAGCGCU   1   |||||||||||||||||||||||= targets:2263   AGGCUCAAAAGAUUUAUCUCGCGG   2286 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090007C12, full insert sequence	NA	coding protein	psRNATarget
AK120219.1	ncRNA:24   UCCGAGUUUUCUAAAUAGAGCGCU   1   ||||||||||||||*||||||||| targets:612   AGGCUCAAAAGAUUCAUCUCGCGA   635 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013041B17, full insert sequence	NA	coding protein	psRNATarget
XM_015781196.1	ncRNA:24   UCCGAGUUUUCUAAAUAGAGCGCU   1   ||*||=|||||||||=|||||||| targets:2153   AGACUUAAAAGAUUUGUCUCGCGA   2176 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA	GATA transcription factor 6(LOC4336532)	coding protein	psRNATarget
XM_015778499.1	ncRNA:24   UCCGAGUUUUCUAAAUAGAGCGCU   1   ||*||=||||||||*||||||||| targets:24   AGACUUAAAAGAUUCAUCUCGCGA   47 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase ERECTA (LOC4334979), transcript variant X3, mRNA	LRR receptor-like serine/threonine-protein kinase ERECTA(LOC4334979)	coding protein	psRNATarget
AK099773.1	ncRNA:24   UCCGAGUUUUCUAAAUAGAGCGCU   1   ||*||=||||||||*||||||||| targets:721   AGACUUAAAAGAUUCAUCUCGCGA   744 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013095E04, full insert sequence	NA	coding protein	psRNATarget
AK065510.1	ncRNA:24   UCCGAGUUUUCUAAAUAGAGCGCU   1   ||*||=||||||||*||||||||| targets:791   AGACUUAAAAGAUUCAUCUCGCGA   814 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013030L03, full insert sequence	NA	coding protein	psRNATarget
AK288737.1	ncRNA:24   UCCGAGUUUUCUAAAUAGAGCGCU   1   ||*|||||*|||||*||||||||| targets:1470   AGACUCAAUAGAUUCAUCUCGCGA   1493 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget