A ncRNA database for oil producing plants

Search result

BaseInfo

ncRNA ID	novel_osa_miR3166
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:17152703-17152853 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556011;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AGUUUACAGGCGGAAUAUGUAAUU - 24
Stem-loop(if miRNA)	-- CAG A CUU CA AUA UAAC GA U UUGCA UCCG CUGUAAAUUGUGAGACGAAU UUGAGCCUAAUUA CU AUU AAUGU UAC A \|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\| \|\|\| AAUGU AGGC GACAUUUGACGCUCUGUUUA AAUUCGGAUUAAU GA UAA UUACA AUG C UU AUA G AAU UG AAG UCGU -A A
Stem-loop sequence	UUGCACAGUCCGACUGUAAAUUGUGAGACGAAUCUUUUGAGCCUAAUUACACUAUAAUUUAACAAUGUGAUACUACAGUAAACAUUUGCUAAUGAAAGGUUAAUUAGGCUUAAUAAAUUUGUCUCGCAGUUUACAGGCGGAAUAUGUAAUU

Targets Info

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

AK065510.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:684	AAUUACAUAUUCCGCCUGUAAACU	707

0.0

Oryza sativa Japonica Group cDNA clone:J013030L03, full insert sequence

coding protein

psRNATarget

AK099773.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:614	AAUUACAUAUUCCGCCUGUAAACU	637

0.0

Oryza sativa Japonica Group cDNA clone:J013095E04, full insert sequence

coding protein

psRNATarget

AK288540.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1630	AAUUACAGAUUCCGCCUGUAAACU	1653

1.0

Oryza sativa Japonica Group cDNA, clone: J090045N03, full insert sequence

coding protein

psRNATarget

AK099802.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:742	AAUUACAGAUUCCGCCUGUAAACU	765

1.0

Oryza sativa Japonica Group cDNA clone:J013098A22, full insert sequence

coding protein

psRNATarget

XM_015773694.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:736	AAUUACAGAUUCCGCCUGUAAACU	759

1.0

PREDICTED: Oryza sativa Japonica Group putative ubiquitin-like-specific protease 1B (LOC9268223), transcript variant X2, mRNA

putative ubiquitin-like-specific protease 1B(LOC9268223)

coding protein

psRNATarget

XM_015779465.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|\|\|\|\|\|\|*\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:4285	AAUUACAGAUUCUGCCUGUAAACU	4308

2.5

PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase FLS2 (LOC4337016), mRNA

LRR receptor-like serine/threonine-protein kinase FLS2(LOC4337016)

coding protein

psRNATarget

AK120736.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|\|\|\|\|\|\|*\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|
targets:3021	AAUUACAGAUUCCGUCUGUAAACU	3044

2.5

Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence

coding protein

psRNATarget

AK120799.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|\|\|\|\|\|\|*\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:3860	AAUUACAGAUUCUGCCUGUAAACU	3883

2.5

Oryza sativa Japonica Group cDNA clone:J023012H18, full insert sequence

coding protein

psRNATarget

AK072358.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|\|\|\|\|=\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:2911	AAUUAUAGAUUCCGCCUGUAAACU	2934

2.0

Oryza sativa Japonica Group cDNA clone:J023056H23, full insert sequence

coding protein

psRNATarget

AK242584.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|\|\|\|\|=\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:2453	AAUUAUAGAUUCCGCCUGUAAACU	2476

2.0

Oryza sativa Japonica Group cDNA, clone: J090010K24, full insert sequence

coding protein

psRNATarget

XM_015772097.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|\|\|\|\|\|\|*\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|
targets:1810	AAUUACAGAUUUCGCCUGUAAACU	1833

2.5

PREDICTED: Oryza sativa Japonica Group cinnamate beta-D-glucosyltransferase (LOC4328553), mRNA

cinnamate beta-D-glucosyltransferase(LOC4328553)

coding protein

psRNATarget

AK120234.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|=\|\|\|=\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:2400	AGUUAUAGAUUCCGCCUGUAAACU	2423

2.0

Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence

coding protein

psRNATarget

AK288948.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:422	AAUUACAGAUUCCACCUGUAAACU	445

2.5

Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence

coding protein

psRNATarget

AK288806.1

ncRNA:24	UUAAUGUAUAAGGCGGACAUUUGA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1307	AAUUACAGAUUCCGCCUGAAAACU	1330

2.5

Oryza sativa Japonica Group cDNA, clone: J090071K16, full insert sequence

coding protein

psRNATarget