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BaseInfo

ncRNA ID	novel_osa_miR3165
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:20031359-20031469 [-]
Reference genome	IRGSP-1.0
Source	SRR2040385;SRR2040389;SRR2040399;SRR2040410;SRR1738227
Length	24
Mature sequence(if miRNA)	88 - UUACGAGACGAAUAUUUUAAGCCU - 111
Stem-loop(if miRNA)	--             AUU             C     G U   -A      GGUGU   UUACGAGACGAAU   UUAAGCCUAAUUG UUCAU C UUG  GAAUGU     U   |||||||||||||   ||||||||||||| ||||| | |||  ||||||     A   GGUGCUCUGUUUA   AAUUUGGAUUAAU AGGUA G AAU  UUUACA     C UU             AAU             U     - U   CG      AAUGA
Stem-loop sequence	UUACGAGACGAAUAUUUUAAGCCUAAUUGCUUCAUGCUUUGAGAAUGUGGUGUUACAGUAAACAUUUGCUAAUGAUGGAUUAAUUAGGUUUAAUAAAUUUGUCUCGUGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288806.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   |||||||||||||||||||||||| targets:1414   AGGCUUAAAAUAUUCGUCUCGUAA   1437 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090071K16, full insert sequence	NA	coding protein	psRNATarget
AK288647.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   ||||||||||*||||||||||||| targets:2095   AGGCUUAAAAGAUUCGUCUCGUAA   2118 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090056K16, full insert sequence	NA	coding protein	psRNATarget
AK288660.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   ||||||||||*||||||||||||| targets:2421   AGGCUUAAAAGAUUCGUCUCGUAA   2444 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence	NA	coding protein	psRNATarget
XM_015773668.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   ||||||||||*||||||||||||| targets:1800   AGGCUUAAAAGAUUCGUCUCGUAA   1823 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269613 (LOC9269613), mRNA	uncharacterized LOC9269613(LOC9269613)	coding protein	psRNATarget
AK067087.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   ||||||||||*||||||||=|||| targets:1965   AGGCUUAAAAGAUUCGUCUUGUAA   1988 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013095A19, full insert sequence	NA	coding protein	psRNATarget
AK120109.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   ||||||||||*||||||||=|||| targets:1966   AGGCUUAAAAGAUUCGUCUUGUAA   1989 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013023O17, full insert sequence	NA	coding protein	psRNATarget
AK119352.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   |||=||||||*||||||||||||| targets:2071   AGGUUUAAAAGAUUCGUCUCGUAA   2094 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-131-F04, full insert sequence	NA	coding protein	psRNATarget
XM_015769937.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   |||=||||||*||||||||||||| targets:2077   AGGUUUAAAAGAUUCGUCUCGUAA   2100 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X1, mRNA	OTU domain-containing protein 5-A(LOC4331162)	coding protein	psRNATarget
XM_015769938.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   |||=||||||*||||||||||||| targets:1984   AGGUUUAAAAGAUUCGUCUCGUAA   2007 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X2, mRNA	OTU domain-containing protein 5-A(LOC4331162)	coding protein	psRNATarget
AK289029.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   ||||||||||*||||||||||*|| targets:2219   AGGCUUAAAAGAUUCGUCUCGCAA   2242 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090090O22, full insert sequence	NA	coding protein	psRNATarget
AK072341.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   ||||||||||*||||*|||||||| targets:2389   AGGCUUAAAAGAUUCAUCUCGUAA   2412 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence	NA	coding protein	psRNATarget
CT837948.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   ||||||||||*|||||||||*||| targets:596   AGGCUUAAAAGAUUCGUCUCAUAA   619 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008C05, full insert sequence	NA	coding protein	psRNATarget
AK289087.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   ||||||||*|*||||||||||||= targets:4329   AGGCUUAAUAGAUUCGUCUCGUAG   4352 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090095K03, full insert sequence	NA	coding protein	psRNATarget
XM_015775745.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   ||||||||*|*||||||||||||= targets:349   AGGCUUAAUAAAUUCGUCUCGUAG   372 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group transcription factor BHLH148 (LOC4334060), mRNA	transcription factor BHLH148(LOC4334060)	coding protein	psRNATarget
AK243163.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   ||||||||*|*||||||||||||= targets:293   AGGCUUAAUAAAUUCGUCUCGUAG   316 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J100034L01, full insert sequence	NA	coding protein	psRNATarget
AK102033.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   ||*|||||*||||||||||||*|| targets:423   AGUCUUAAUAUAUUCGUCUCGCAA   446 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033081B10, full insert sequence	NA	coding protein	psRNATarget
AK072161.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   ||*|||||||*||||||||||*|| targets:1116   AGACUUAAAAGAUUCGUCUCGCAA   1139 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013132P06, full insert sequence	NA	coding protein	psRNATarget
AK067582.1	ncRNA:24   UCCG-AAUUUUAUAAGCAGAGCAUU   1   **||-||||||*|||=||||||||| targets:1487   UAGCAUUAAAAGAUUUGUCUCGUAA   1511 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013112G19, full insert sequence	NA	coding protein	psRNATarget
XM_015791314.1	ncRNA:24   UCCGAAUUUUAUAAGCAGAGCAUU   1   |*|=||||*|*||||||||||||= targets:1961   AUGUUUAAUAAAUUCGUCUCGUAG   1984 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343872 (LOC4343872), transcript variant X7, mRNA	uncharacterized LOC4343872(LOC4343872)	coding protein	psRNATarget