Search result

BaseInfo

ncRNA ID	novel_osa_miR3163
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:14267284-14267341 [-]
Reference genome	IRGSP-1.0
Source	SRR2040385
Length	25
Mature sequence(if miRNA)	34 - ACCGGGACUAAAGAUGGCUCAGCCU - 58
Stem-loop(if miRNA)	--       C                UGC   ACCGGGA UAAAGAUGGCUCAGCC   C   ||||||| ||||||||||||||||   UGGCCCU AUUUCUACCGAGUCGG   A AU       C                UGC
Stem-loop sequence	ACCGGGACUAAAGAUGGCUCAGCCUGCCACGUGGCUGAGCCAUCUUUACUCCCGGUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242216.1	ncRNA:25   UCCGACUCGGUAGAAAUCAGGGCCA   1   **|*|*|*||**||||||||||||| targets:577   UUGAUAACCCCCCUUUAGUCCCGGU   601 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:25   UCC-GA---CUCGGUAGAAAUCAGGGCCA   1   =||-||---||*|*||||||||||||||| targets:1817   GGGACUAAAGAUCGAUCUUUAGUCCCGGU   1845 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288377.1	ncRNA:25   UCCGACUCGGUAGAAAUCAGGGCCA   1   |*****|||*||||||||||||||| targets:1367   AAAGAUAGCGAUCUUUAGUCCCGGU   1391 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
AK288167.1	ncRNA:25   UCC-GA---CUCGGUAGAAAUCAGGGCCA   1   =||-||---||*|*||||||||||||||* targets:1770   GGGACUAAAGAUCGAUCUUUAGUCCCGGA   1798 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090002K22, full insert sequence	NA	coding protein	psRNATarget