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BaseInfo

ncRNA ID	novel_osa_miR3162
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:19842558-19842729 [-]
Reference genome	IRGSP-1.0
Source	SRR2040385
Length	22
Mature sequence(if miRNA)	151 - UUUUUGAUUGCAACGUUUGACC - 172
Stem-loop(if miRNA)	--      A                             UUUUU     C    AUAAAAAACGAAAAG     -    AAG  C  U   UUUUUG UUGCAACGUUUGACCACUUGUCUUAUUUA     UUUUG AAAU               UUGUG CUUA   UA UG A   |||||| |||||||||||||||||||||||||||||     ||||| ||||               ||||| ||||   || ||   AAAAAU AACGUUGCAAACUGGUGAGCAGAAUAAGU     AAAAC UUUA               AACAC GAAU   AU AU G UC      G                             UUUUU     -    AUAAUAAAUAAAAUA     U    GAA  A  A
Stem-loop sequence	UUUUUGAUUGCAACGUUUGACCACUUGUCUUAUUUAUUUUUUUUUGCAAAUAUAAAAAACGAAAAGUUGUGCUUAAAGUACUGUAGAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUCAAAAUUUUUUGAAUAAGACGAGUGGUCAAACGUUGCAAGUAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK102017.1	ncRNA:22   CCAGUUUGCAACGUUAGUUUUU   1   |||||||||||||||*|||||| targets:1059   GGUCAAACGUUGCAAGCAAAAA   1080 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033080F19, full insert sequence	NA	coding protein	psRNATarget
AK100009.1	ncRNA:22   CCAGUUUGCAACGUUAGUUUUU   1   |||||||||||||||*|||||| targets:1040   GGUCAAACGUUGCAAGCAAAAA   1061 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:22   CCAGUUUGCAACGUUAGUUUUU   1   |||||||||||||||*|||||| targets:3060   GGUCAAACGUUGCAAGCAAAAA   3081 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:22   CCAGUUUGCAACGUUAGUUUUU   1   |||||||||||||||*|||||| targets:4056   GGUCAAACGUUGCAAGCAAAAA   4077 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
LQ236678.1	ncRNA:22   CCAGUUUGCAACGUUAGUUUUU   1   |||||||=|||||||*|||||| targets:159   GGUCAAAUGUUGCAAGCAAAAA   180 Target Full Sequence	2.5	Sequence 2673 from Patent EP2985353	NA	coding protein	psRNATarget
HI404548.1	ncRNA:22   CCAGUUUGCAACGUUAGUUUUU   1   |||||||=|||||||*|||||| targets:159   GGUCAAAUGUUGCAAGCAAAAA   180 Target Full Sequence	2.5	Sequence 2673 from Patent EP2074227	NA	coding protein	psRNATarget
JB165009.1	ncRNA:22   CCAGUUUGCAACGUUAGUUUUU   1   |||||||=|||||||*|||||| targets:159   GGUCAAAUGUUGCAAGCAAAAA   180 Target Full Sequence	2.5	Sequence 2673 from Patent EP2559767	NA	coding protein	psRNATarget
AK289089.1	ncRNA:22   CCAGUUUGCAACGUUAGUUUUU   1   |||||||=|||||||*|||||| targets:1454   GGUCAAAUGUUGCAAGCAAAAA   1475 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095N08, full insert sequence	NA	coding protein	psRNATarget
XM_015790883.1	ncRNA:22   CCAGUUUGCAACGUUAGUUUUU   1   |||||||=|||||||*|||||| targets:1915   GGUCAAAUGUUGCAAGCAAAAA   1936 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 7-deoxyloganetic acid glucosyltransferase (LOC9267967), mRNA	7-deoxyloganetic acid glucosyltransferase(LOC9267967)	coding protein	psRNATarget
XM_015773783.1	ncRNA:22   CCAGUUUGCAACGUUAGUUUUU   1   |*|||||||||||||*|||||| targets:1980   GAUCAAACGUUGCAAGCAAAAA   2001 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X1, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
XM_015773784.1	ncRNA:22   CCAGUUUGCAACGUUAGUUUUU   1   |*|||||||||||||*|||||| targets:2074   GAUCAAACGUUGCAAGCAAAAA   2095 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X2, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
AK068900.1	ncRNA:22   CCAGUUUGCAACGUUAGUUUUU   1   |**|||*=|||||||||||||= targets:354   GAACAAUUGUUGCAAUCAAAAG   375 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023001A04, full insert sequence	NA	coding protein	psRNATarget