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BaseInfo

ncRNA ID	novel_osa_miR3161
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:5825205-5825305 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2097779;SRR2098557;SRR2098560;SRR2098822;SRR1556011;SRR2890846;SRR4407777;SRR4407961;SRR4407962;SRR1556020;SRR1654490;SRR1654491
Length	24
Mature sequence(if miRNA)	1 - AUGAAUAUGGACAAUACUAGAAAG - 24
Stem-loop(if miRNA)	--                  G      C           C   ---G    A   UUCUAGUAUUGUCCAUAU CAUAUA AUGUUAAUGAA CUA    ACAU U   |||||||||||||||||| |||||| ||||||||||| |||    ||||   AAGAUCAUAACAGGUAUA GUAUAU UACAAUUACUU GAU    UGUG A GA                  A      C           A   GAUA    U
Stem-loop sequence	UUCUAGUAUUGUCCAUAUGCAUAUACAUGUUAAUGAACCUAGACAUAUAUGUGUAUAGUAGAUUCAUUAACAUCUAUAUGAAUAUGGACAAUACUAGAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT833624.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||||||*||||||||||||||| targets:1043   CUUUCUAGCAUUGUCCAUAUUCAU   1066 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046D04, full insert sequence	NA	coding protein	psRNATarget
XM_015772638.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||=|||||||||||||||*||| targets:1236   CUUUUUAGUAUUGUCCAUAUACAU   1259 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable carboxylesterase 8 (LOC4332273), mRNA	probable carboxylesterase 8(LOC4332273)	coding protein	psRNATarget
AK241082.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||=|||||||||||||||*||| targets:1219   CUUUUUAGUAUUGUCCAUAUACAU   1242 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065073H04, full insert sequence	NA	coding protein	psRNATarget
XM_015775404.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   =|||||||*|||||=||||||||| targets:3335   UUUUCUAGCAUUGUUCAUAUUCAU   3358 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 1A (LOC4331702), transcript variant X1, mRNA	protein NETWORKED 1A(LOC4331702)	coding protein	psRNATarget
XM_015775405.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   =|||||||*|||||=||||||||| targets:3335   UUUUCUAGCAUUGUUCAUAUUCAU   3358 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 1A (LOC4331702), transcript variant X2, mRNA	protein NETWORKED 1A(LOC4331702)	coding protein	psRNATarget
XM_015791317.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   |||*||||*||||||||||||||| targets:4441   CUUCCUAGCAUUGUCCAUAUUCAU   4464 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342778 (LOC4342778), transcript variant X1, mRNA	uncharacterized LOC4342778(Os07g0231700)	coding protein	psRNATarget
XM_015767211.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||||||*||||||||*|||||| targets:4019   CUUUCUAGCAUUGUCCACAUUCAU   4042 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767214.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||||||*||||||||*|||||| targets:3952   CUUUCUAGCAUUGUCCACAUUCAU   3975 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X3, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767212.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||||||*||||||||*|||||| targets:3923   CUUUCUAGCAUUGUCCACAUUCAU   3946 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767217.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||||||*||||||||*|||||| targets:3856   CUUUCUAGCAUUGUCCACAUUCAU   3879 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X6, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767215.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||||||*||||||||*|||||| targets:3797   CUUUCUAGCAUUGUCCACAUUCAU   3820 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X4, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767218.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||||||*||||||||*|||||| targets:3701   CUUUCUAGCAUUGUCCACAUUCAU   3724 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X7, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
AK073522.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||||||*||||||||*|||||| targets:2490   CUUUCUAGCAUUGUCCACAUUCAU   2513 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033046G09, full insert sequence	NA	coding protein	psRNATarget
XM_015764678.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||||||*||||||||*|||||| targets:1606   CUUUCUAGCAUUGUCCACAUUCAU   1629 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mannan endo-1,4-beta-mannosidase 8 (LOC9271116), mRNA	mannan endo-1,4-beta-mannosidase 8(LOC9271116)	coding protein	psRNATarget
CT835628.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||||||*||||||||*|||||| targets:1170   CUUUCUAGCAUUGUCCACAUUCAU   1193 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042P11, full insert sequence	NA	coding protein	psRNATarget
XM_015790894.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||||||*||||||||*|||||| targets:556   CUUUCUAGCAUUGUCCACAUUCAU   579 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276821 (LOC107276821), mRNA	uncharacterized LOC107276821(LOC107276821)	coding protein	psRNATarget
XM_015755175.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||=||*|||||||||*|||||| targets:1717   CUUUUUAAUAUUGUCCACAUUCAU   1740 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 76M5-like (LOC4347207), mRNA	cytochrome P450 76M5-like(LOC4347207)	coding protein	psRNATarget
AK243435.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   ||||=||*|||||||||*|||||| targets:1707   CUUUUUAAUAUUGUCCACAUUCAU   1730 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100068A12, full insert sequence	NA	coding protein	psRNATarget
HI403946.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   |||*||||*||||||||*|||||| targets:13   CUUCCUAGCAUUGUCCACAUUCAU   36 Target Full Sequence	2.5	Sequence 2071 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236076.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   |||*||||*||||||||*|||||| targets:13   CUUCCUAGCAUUGUCCACAUUCAU   36 Target Full Sequence	2.5	Sequence 2071 from Patent EP2985353	NA	coding protein	psRNATarget
JB164407.1	ncRNA:24   GAAAGAUCAUAACAGGUAUAAGUA   1   |||*||||*||||||||*|||||| targets:13   CUUCCUAGCAUUGUCCACAUUCAU   36 Target Full Sequence	2.5	Sequence 2071 from Patent EP2559767	NA	coding protein	psRNATarget