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BaseInfo

ncRNA ID	novel_osa_miR3159
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:22115800-22115978 [+]
Reference genome	IRGSP-1.0
Source	SRR2040385;SRR2040398
Length	24
Mature sequence(if miRNA)	1 - UGAAAACUACCGUUGGAUCGAGAA - 24
Stem-loop(if miRNA)	--                           A  A          G               G              C  ACAAAAUUU      C   UGAAAACUACCGUUGGAUCGAGAAAUG AC UCCGAGAUUC UUCACGUCAUCAUGA UAAAAAUUUUACUC CA         UUUACU A   ||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| |||||||||||||| ||         ||||||   ACUUUUGAUGGCAACUUAGCUUUUUAU UG AGGCUUUAAG AGGUGUAGUAGUGCU AUUUUUAAAGUGAG GU         AAAUGA U GA                           C  C          A               A              C  -------CU      G
Stem-loop sequence	UGAAAACUACCGUUGGAUCGAGAAAUGAACAUCCGAGAUUCGUUCACGUCAUCAUGAGUAAAAAUUUUACUCCCAACAAAAUUUUUUACUCAUGAGUAAAUCUGCGAGUGAAAUUUUUAAUCGUGAUGAUGUGGAAGAAUUUCGGACGUCUAUUUUUCGAUUCAACGGUAGUUUUCAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK062635.1	ncRNA:24   AAGAGCUAGGUUGCCAUCAAAAGU   1   ||||||||||||=||||||||||| targets:77   UUCUCGAUCCAAUGGUAGUUUUCA   100 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-105-D01, full insert sequence	NA	coding protein	psRNATarget
XM_015755494.1	ncRNA:24   AAGAGCUAGGUUGCCAUCAAAAGU   1   ||=|||||||||||||||||||=| targets:508   UUUUCGAUCCAACGGUAGUUUUUA   531 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277973 (LOC107277973), transcript variant X1, mRNA	uncharacterized LOC107277973(LOC107277973)	coding protein	psRNATarget
CT835866.1	ncRNA:24   AAGAGCUAGGUUGCCAUCAAAAGU   1   |||||||||=|||||||||||*|| targets:299   UUCUCGAUCUAACGGUAGUUUCCA   322 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI027A04, full insert sequence	NA	coding protein	psRNATarget
XM_015755327.1	ncRNA:24   AAGAGCUAGGUUGCCAUCAAAAGU   1   |||||||||=|||||||||||*|| targets:1594   UUCUCGAUCUAACGGUAGUUUCCA   1617 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable cinnamyl alcohol dehydrogenase 8D (LOC4346993), mRNA	probable cinnamyl alcohol dehydrogenase 8D(LOC4346993)	coding protein	psRNATarget
AK288582.1	ncRNA:24   AAGAGCUAGGUUGCCAUCAAAAGU   1   |||*|||||=|||||||||||*|| targets:211   UUCACGAUCUAACGGUAGUUUCCA   234 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090049I19, full insert sequence	NA	coding protein	psRNATarget
XM_015787322.1	ncRNA:24   AAGAGCUAGGUUGCCAUCAAAAGU   1   ||=|=*||||*||||||||||||| targets:2298   UUUUUUAUCCUACGGUAGUUUUCA   2321 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group transcription factor SPEECHLESS (LOC9268477), mRNA	transcription factor SPEECHLESS(LOC9268477)	coding protein	psRNATarget
AK287482.1	ncRNA:24   AAGAGCUAGGUUGCCAUCAAAAGU   1   ||=|=*||||*||||||||||||| targets:2299   UUUUUUAUCCUACGGUAGUUUUCA   2322 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J043025B18, full insert sequence	NA	coding protein	psRNATarget