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BaseInfo

ncRNA ID	novel_osa_miR3154
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:1270499-1270610 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2097778;SRR2097779;SRR2098560;SRR2098822;SRR2099567;SRR1556011;SRR4407962;SRR1556020
Length	24
Mature sequence(if miRNA)	89 - GCUUAUAUUUUGGGACGGAUGGAG - 112
Stem-loop(if miRNA)	--  C                                   CUGGAC   UCAU   UA   CC UCCGUCCCAAAAUAUAAGCAUUUUUAGCUAUGAAU      GAU    AGC  A   || |||||||||||||||||||||||||||||||||||      |||    |||  A   GG AGGCAGGGUUUUAUAUUCGUAAAAAUCGAUACUUA      UUA    UCG  A GA  U                                   ----UU   -UAU   UA
Stem-loop sequence	CCCUCCGUCCCAAAAUAUAAGCAUUUUUAGCUAUGAAUCUGGACGAUUCAUAGCUAAAAAUGCUUAUAUUUUAUUCAUAGCUAAAAAUGCUUAUAUUUUGGGACGGAUGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK066050.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   |||||||||||||||||||||||| targets:1604   CUCCAUCCGUCCCAAAAUAUAAGC   1627 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013050F13, full insert sequence	NA	coding protein	psRNATarget
XM_015778866.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   |||||||||||=|||||||||||| targets:1915   CUCCAUCCGUCUCAAAAUAUAAGC   1938 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group sugar transport protein 5 (LOC4336011), mRNA	sugar transport protein 5(LOC4336011)	coding protein	psRNATarget
AK289040.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   |||=|||||||||||||||||||| targets:2198   CUCUAUCCGUCCCAAAAUAUAAGC   2221 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090091O20, full insert sequence	NA	coding protein	psRNATarget
CT835949.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||||=||||||||||||||||= targets:506   CUCCAUUCGUCCCAAAAUAUAAGU   529 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI017C02, full insert sequence	NA	coding protein	psRNATarget
XM_015763581.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||||||||||||||||=||||* targets:1408   CUCCAUCCGUCCCAAAAUGUAAGA   1431 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group benzyl alcohol O-benzoyltransferase-like (LOC107276754), mRNA	benzyl alcohol O-benzoyltransferase-like(LOC107276754)	coding protein	psRNATarget
XM_015770646.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:1944   CUCCCUCCGUCCCAAAAUAUAAGC   1967 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein DETOXIFICATION 46, chloroplastic (LOC4328128), mRNA	protein DETOXIFICATION 46, chloroplastic(LOC4328128)	coding protein	psRNATarget
AK066842.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:924   CUCCCUCCGUCCCAAAAUAUAAGC   947 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013084A11, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:2818   CUCCCUCCGUCCCAAAAUAUAAGC   2841 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
XM_015784400.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:3521   CUCCCUCCGUCCCAAAAUAUAAGC   3544 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X13, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784401.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:3569   CUCCCUCCGUCCCAAAAUAUAAGC   3592 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X14, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784390.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:4094   CUCCCUCCGUCCCAAAAUAUAAGC   4117 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784399.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:4992   CUCCCUCCGUCCCAAAAUAUAAGC   5015 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X12, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784392.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:5026   CUCCCUCCGUCCCAAAAUAUAAGC   5049 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X6, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784395.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:5517   CUCCCUCCGUCCCAAAAUAUAAGC   5540 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X9, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784404.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:5517   CUCCCUCCGUCCCAAAAUAUAAGC   5540 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X17, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784389.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:5517   CUCCCUCCGUCCCAAAAUAUAAGC   5540 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784397.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:5517   CUCCCUCCGUCCCAAAAUAUAAGC   5540 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X11, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784391.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:5517   CUCCCUCCGUCCCAAAAUAUAAGC   5540 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X5, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784388.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:5517   CUCCCUCCGUCCCAAAAUAUAAGC   5540 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784393.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:5517   CUCCCUCCGUCCCAAAAUAUAAGC   5540 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X7, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784402.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:5517   CUCCCUCCGUCCCAAAAUAUAAGC   5540 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X15, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784396.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:5512   CUCCCUCCGUCCCAAAAUAUAAGC   5535 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X10, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784387.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:5517   CUCCCUCCGUCCCAAAAUAUAAGC   5540 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784405.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||| targets:5517   CUCCCUCCGUCCCAAAAUAUAAGC   5540 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X18, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015789482.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||=|||||||=||||||||||* targets:2857   CUCCGUCCGUCCUAAAAUAUAAGA   2880 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable galacturonosyltransferase 7 (LOC4344307), mRNA	probable galacturonosyltransferase 7(LOC4344307)	coding protein	psRNATarget
AK243090.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||=|||||||||||||||||*| targets:925   CUCCGUCCGUCCCAAAAUAUAAAC   948 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J100022L23, full insert sequence	NA	coding protein	psRNATarget
AK099435.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   |||=*||||||||||||||||||| targets:1679   CUCUCUCCGUCCCAAAAUAUAAGC   1702 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013014O02, full insert sequence	NA	coding protein	psRNATarget
AK100759.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||= targets:627   CUCCCUCCGUCCCAAAAUAUAAGU   650 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023119B10, full insert sequence	NA	coding protein	psRNATarget
XM_015790547.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   |||=*||||||||||||||||||| targets:2399   CUCUCUCCGUCCCAAAAUAUAAGC   2422 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group primary amine oxidase (LOC4343673), mRNA	primary amine oxidase(LOC4343673)	coding protein	psRNATarget
XM_015762280.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||=||||||||||||| targets:2252   CUCCUUCCGUUCCAAAAUAUAAGC   2275 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group F-box/FBD/LRR-repeat protein At1g13570 (LOC4350650), transcript variant X11, mRNA	F-box/FBD/LRR-repeat protein At1g13570(LOC4350650)	coding protein	psRNATarget
AK120297.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||=|||||||||||| targets:663   CUCCCUCCGUCUCAAAAUAUAAGC   686 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013051O08, full insert sequence	NA	coding protein	psRNATarget
AK069269.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||=|||||||||||| targets:2225   CUCCCUCCGUCUCAAAAUAUAAGC   2248 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023018K07, full insert sequence	NA	coding protein	psRNATarget
AK121172.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||=||||||||||| targets:253   CUCCCUCCGUCCUAAAAUAUAAGC   276 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023081I09, full insert sequence	NA	coding protein	psRNATarget
JB164562.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   =|||||||||||||||||||||** targets:6   UUCCAUCCGUCCCAAAAUAUAAAG   29 Target Full Sequence	2.5	Sequence 2226 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236231.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   =|||||||||||||||||||||** targets:6   UUCCAUCCGUCCCAAAAUAUAAAG   29 Target Full Sequence	2.5	Sequence 2226 from Patent EP2985353	NA	coding protein	psRNATarget
HI404101.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   =|||||||||||||||||||||** targets:6   UUCCAUCCGUCCCAAAAUAUAAAG   29 Target Full Sequence	2.5	Sequence 2226 from Patent EP2074227	NA	coding protein	psRNATarget
AK241555.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||||||||||||*||||||||* targets:110   CUCCAUCCGUCCCAUAAUAUAAGA   133 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065178B07, full insert sequence	NA	coding protein	psRNATarget
XM_015767620.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||||||||||||*||||||||* targets:1810   CUCCAUCCGUCCCAUAAUAUAAGA   1833 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324862 (LOC4324862), mRNA	uncharacterized LOC4324862(LOC4324862)	coding protein	psRNATarget
AK288180.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||* targets:1268   CUCCCUCCGUCCCAAAAUAUAAGG   1291 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090005C24, full insert sequence	NA	coding protein	psRNATarget
AK242602.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||* targets:3743   CUCCCUCCGUCCCAAAAUAUAAGA   3766 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090014K11, full insert sequence	NA	coding protein	psRNATarget
XM_015761638.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||||||||||||* targets:3865   CUCCCUCCGUCCCAAAAUAUAAGG   3888 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107278048), mRNA	putative receptor protein kinase ZmPK1(LOC107278048)	coding protein	psRNATarget
AK099713.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|==|||||||||||||||| targets:1074   CUCCCUUUGUCCCAAAAUAUAAGC   1097 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013084B13, full insert sequence	NA	coding protein	psRNATarget
AK071927.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   *|||*|||||||=||||||||||| targets:1983   AUCCCUCCGUCCUAAAAUAUAAGC   2006 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013069M04, full insert sequence	NA	coding protein	psRNATarget
XM_015772652.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   |||*||||||||||=||||||||* targets:2384   CUCAAUCCGUCCCAGAAUAUAAGA   2407 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333636 (LOC4333636), transcript variant X2, mRNA	uncharacterized LOC4333636(LOC4333636)	coding protein	psRNATarget
XM_015772651.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   |||*||||||||||=||||||||* targets:2528   CUCAAUCCGUCCCAGAAUAUAAGA   2551 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333636 (LOC4333636), transcript variant X1, mRNA	uncharacterized LOC4333636(LOC4333636)	coding protein	psRNATarget
AK066988.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||*|||||||||||=||||||||* targets:2087   CUACAUCCGUCCCAGAAUAUAAGA   2110 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013093O18, full insert sequence	NA	coding protein	psRNATarget
AK065786.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||*|||||||||||=||||||||* targets:2029   CUACAUCCGUCCCAGAAUAUAAGA   2052 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039J24, full insert sequence	NA	coding protein	psRNATarget
XM_015770193.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||=|||||||||||||||* targets:1034   CUCCCUCUGUCCCAAAAUAUAAGG   1057 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
XM_015770193.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:2855   CUCCCUCCGUCCCAUAAUAUAAGG   2878 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
EF576496.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||||||||**|||||||||||| targets:273   CUCCAUCCGUAACAAAAUAUAAGC   296 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) clone OSS-289-384-F7 unknown mRNA	NA	coding protein	psRNATarget
CT829618.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||||||||**|||||||||||| targets:1244   CUCCAUCCGUAACAAAAUAUAAGC   1267 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA125G02, full insert sequence	NA	coding protein	psRNATarget
XM_015787988.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   =|||-||||||=|||||||||||| targets:2197   UUCC-UCCGUCUCAAAAUAUAAGC   2219 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable indole-3-acetic acid-amido synthetase GH3.1 (LOC4327043), mRNA	probable indole-3-acetic acid-amido synthetase GH3.1(LOC4327043)	coding protein	psRNATarget
AK063368.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   =|||-||||||=|||||||||||| targets:2203   UUCC-UCCGUCUCAAAAUAUAAGC   2225 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-114-D12, full insert sequence	NA	coding protein	psRNATarget
XM_015763251.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||||||||||*| targets:1581   CUCCCUCCGUCCCAAAAUAUAAAC   1604 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group F-box only protein 7 (LOC4351522), transcript variant X2, mRNA	F-box only protein 7(LOC4351522)	coding protein	psRNATarget
AK288798.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||=|*||=||||||||||=||||| targets:1615   CUUCCUCUGUCCCAAAAUGUAAGC   1638 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070H05, full insert sequence	NA	coding protein	psRNATarget
XM_015770562.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||**|||||||||||||||||| targets:3909   CUCCCACCGUCCCAAAAUAUAAGC   3932 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X11, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
AK122047.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|==||=||||||||||||| targets:1657   CUCCUUUUGUUCCAAAAUAUAAGC   1680 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033114C22, full insert sequence	NA	coding protein	psRNATarget
AK241633.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||**|||||||||||||||||| targets:4018   CUCCCACCGUCCCAAAAUAUAAGC   4041 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065188C01, full insert sequence	NA	coding protein	psRNATarget
XM_015770561.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||**|||||||||||||||||| targets:4515   CUCCCACCGUCCCAAAAUAUAAGC   4538 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X10, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
XM_015770560.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||**|||||||||||||||||| targets:4519   CUCCCACCGUCCCAAAAUAUAAGC   4542 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X9, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
XM_015770556.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||**|||||||||||||||||| targets:4749   CUCCCACCGUCCCAAAAUAUAAGC   4772 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X6, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
XM_015770554.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||**|||||||||||||||||| targets:4906   CUCCCACCGUCCCAAAAUAUAAGC   4929 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X4, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
XM_015770555.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||**|||||||||||||||||| targets:5009   CUCCCACCGUCCCAAAAUAUAAGC   5032 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X5, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
XM_015770557.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||**|||||||||||||||||| targets:5160   CUCCCACCGUCCCAAAAUAUAAGC   5183 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X7, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
XM_015770551.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||**|||||||||||||||||| targets:5166   CUCCCACCGUCCCAAAAUAUAAGC   5189 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X1, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
XM_015770552.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||**|||||||||||||||||| targets:5255   CUCCCACCGUCCCAAAAUAUAAGC   5278 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X2, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
XM_015770553.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||**|||||||||||||||||| targets:5258   CUCCCACCGUCCCAAAAUAUAAGC   5281 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X3, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
XM_015770558.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||**|||||||||||||||||| targets:5548   CUCCCACCGUCCCAAAAUAUAAGC   5571 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X8, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
HI403629.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||||||||||** targets:6   CUCCUUCCGUCCCAAAAUAUAAAG   29 Target Full Sequence	2.5	Sequence 1754 from Patent EP2074227	NA	coding protein	psRNATarget
JB164090.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||||||||||** targets:6   CUCCUUCCGUCCCAAAAUAUAAAG   29 Target Full Sequence	2.5	Sequence 1754 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235759.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||||||||||** targets:6   CUCCUUCCGUCCCAAAAUAUAAAG   29 Target Full Sequence	2.5	Sequence 1754 from Patent EP2985353	NA	coding protein	psRNATarget
AK062793.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||||||||||** targets:181   CUCCCUCCGUCCCAAAAUAUAAAG   204 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-107-C05, full insert sequence	NA	coding protein	psRNATarget
XM_015763567.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||||||||||** targets:1371   CUCCCUCCGUCCCAAAAUAUAACA   1394 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276434 (LOC107276434), mRNA	uncharacterized LOC107276434(LOC107276434)	coding protein	psRNATarget
AK287611.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||||||||||** targets:1443   CUCCCUCCGUCCCAAAAUAUAACA   1466 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065059A09, full insert sequence	NA	coding protein	psRNATarget
AK109615.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||||||||||*= targets:1462   CUCCUUCCGUCCCAAAAUAUAAUU   1485 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-137-G12, full insert sequence	NA	coding protein	psRNATarget
XM_015760168.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||||||||||*= targets:1462   CUCCUUCCGUCCCAAAAUAUAAUU   1485 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350559 (LOC4350559), mRNA	uncharacterized LOC4350559(LOC4350559)	coding protein	psRNATarget
AK068304.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   *|*||||||||||||||||||||* targets:1039   AUACAUCCGUCCCAAAAUAUAAGG   1062 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013145J04, full insert sequence	NA	coding protein	psRNATarget
AK288546.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||||||||||** targets:1252   CUCCCUCCGUCCCAAAAUAUAAAG   1275 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090046I04, full insert sequence	NA	coding protein	psRNATarget
AK100110.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||||||||||** targets:2413   CUCCCUCCGUCCCAAAAUAUAACA   2436 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023005H19, full insert sequence	NA	coding protein	psRNATarget
AK101936.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||=|*||=|||||||||||||||* targets:1889   CUUCCUCUGUCCCAAAAUAUAAGA   1912 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033074D16, full insert sequence	NA	coding protein	psRNATarget
AK120971.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   |||=*|||||||=||||||||||* targets:4667   CUCUCUCCGUCCUAAAAUAUAAGA   4690 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023041G06, full insert sequence	NA	coding protein	psRNATarget
LQ235687.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||*|||||||=|||||||||||*| targets:5   CUACAUCCGUUCCAAAAUAUAACC   28 Target Full Sequence	2.5	Sequence 1682 from Patent EP2985353	NA	coding protein	psRNATarget
HI403557.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||*|||||||=|||||||||||*| targets:5   CUACAUCCGUUCCAAAAUAUAACC   28 Target Full Sequence	2.5	Sequence 1682 from Patent EP2074227	NA	coding protein	psRNATarget
JB164018.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||*|||||||=|||||||||||*| targets:5   CUACAUCCGUUCCAAAAUAUAACC   28 Target Full Sequence	2.5	Sequence 1682 from Patent EP2559767	NA	coding protein	psRNATarget
AK289090.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||*|||||||=|||||||||||*| targets:1417   CUACAUCCGUUCCAAAAUAUAACC   1440 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095N19, full insert sequence	NA	coding protein	psRNATarget
XM_015792497.1	ncRNA:24   GAGGUA-GGCAGGGUUUUAUAUUCG   1   ||||*|-|||||||||||||||||* targets:1653   CUCCCUUCCGUCCCAAAAUAUAAGG   1677 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pathogenesis-related protein PRMS-like (LOC107281807), mRNA	pathogenesis-related protein PRMS-like(LOC107281807)	coding protein	psRNATarget
AK071370.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|=|*||||||||||||||| targets:1916   CUCCCUUCAUCCCAAAAUAUAAGC   1939 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023094J07, full insert sequence	NA	coding protein	psRNATarget
CT835589.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   |||-||||||||||||||||||** targets:43   CUC-AUCCGUCCCAAAAUAUAAUA   65 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015P12, full insert sequence	NA	coding protein	psRNATarget
AK101891.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   |||=*|||||||||||||||||** targets:3611   CUCUCUCCGUCCCAAAAUAUAAUA   3634 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033070O08, full insert sequence	NA	coding protein	psRNATarget
XM_015764835.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:602   CUCCCUCCGUCCCACAAUAUAAGG   625 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase EL5-like (LOC107277589), mRNA	E3 ubiquitin-protein ligase EL5-like(LOC107277589)	coding protein	psRNATarget
AK108488.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:85   CUCCCUCCGUCCCAUAAUAUAAGG   108 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-143-F11, full insert sequence	NA	coding protein	psRNATarget
AK106768.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:118   CUCCCUCCGUCCCAUAAUAUAAGG   141 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-115-F05, full insert sequence	NA	coding protein	psRNATarget
AK107672.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||*|||||||||* targets:833   CUCCCUCCGUCCCUAAAUAUAAGG   856 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-131-H10, full insert sequence	NA	coding protein	psRNATarget
XM_015756113.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:1621   CUCCCUCCGUCCCAUAAUAUAAGG   1644 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At5g47070 (LOC4347684), mRNA	probable receptor-like protein kinase At5g47070(LOC4347684)	coding protein	psRNATarget
XM_015793225.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:1657   CUCCCUCCGUCCCAUAAUAUAAGG   1680 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative lysine-specific demethylase JMJD5 (LOC9269734), transcript variant X2, mRNA	putative lysine-specific demethylase JMJD5(LOC9269734)	coding protein	psRNATarget
XM_015793712.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:1208   CUCCCUCCGUCCCAUAAUAUAAGG   1231 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group polyubiquitin-D (LOC4344831), mRNA	polyubiquitin-D(LOC4344831)	coding protein	psRNATarget
XM_015793224.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:1730   CUCCCUCCGUCCCAUAAUAUAAGG   1753 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative lysine-specific demethylase JMJD5 (LOC9269734), transcript variant X1, mRNA	putative lysine-specific demethylase JMJD5(LOC9269734)	coding protein	psRNATarget
XM_015793226.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:1744   CUCCCUCCGUCCCAUAAUAUAAGG   1767 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative lysine-specific demethylase JMJD5 (LOC9269734), transcript variant X3, mRNA	putative lysine-specific demethylase JMJD5(LOC9269734)	coding protein	psRNATarget
XM_015789462.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:547   CUCCCUCCGUCCCAUAAUAUAAGG   570 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group proline-, glutamic acid- and leucine-rich protein 1 (LOC4343789), mRNA	proline-, glutamic acid- and leucine-rich protein 1(LOC4343789)	coding protein	psRNATarget
XM_015780608.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:1698   CUCCCUCCGUCCCACAAUAUAAGG   1721 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4336246), mRNA	amino acid permease 3(LOC4336246)	coding protein	psRNATarget
XM_015788216.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:2339   CUCCCUCCGUCCCAUAAUAUAAGG   2362 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable DNA helicase MCM9 (LOC4340503), transcript variant X4, mRNA	probable DNA helicase MCM9(LOC4340503)	coding protein	psRNATarget
AK063394.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:2442   CUCCCUCCGUCCCAUAAUAUAAGG   2465 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-114-H06, full insert sequence	NA	coding protein	psRNATarget
AK100667.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:2480   CUCCCUCCGUCCCAUAAUAUAAGG   2503 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023112H01, full insert sequence	NA	coding protein	psRNATarget
XM_015788213.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:2481   CUCCCUCCGUCCCAUAAUAUAAGG   2504 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable DNA helicase MCM9 (LOC4340503), transcript variant X1, mRNA	probable DNA helicase MCM9(LOC4340503)	coding protein	psRNATarget
XM_015772460.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:3046   CUCCCUCCGUCCCAUAAUAUAAGG   3069 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g23020 (LOC4331715), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g23020(LOC4331715)	coding protein	psRNATarget
AK288920.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:3875   CUCCCUCCGUCCCAUAAUAUAAGG   3898 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
AK070885.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*||||||||*|||||||||* targets:4174   CUCCUUCCGUCCCUAAAUAUAAGG   4197 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023064A19, full insert sequence	NA	coding protein	psRNATarget
AK120143.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||*|||||||||*||||||||* targets:2928   CUCCCUCCGUCCCAUAAUAUAAGG   2951 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013028F03, full insert sequence	NA	coding protein	psRNATarget
AK242176.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||-||||||||*|||||||||= targets:1324   CUCC-UCCGUCCCUAAAUAUAAGU   1346 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075159I15, full insert sequence	NA	coding protein	psRNATarget
XM_015774835.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   ||||-||||||||*|||||||||= targets:1380   CUCC-UCCGUCCCUAAAUAUAAGU   1402 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group B-box zinc finger protein 22 (LOC4327073), mRNA	B-box zinc finger protein 22(LOC4327073)	coding protein	psRNATarget
XM_015795569.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   |||=*|||||||||*||||||||= targets:990   CUCUCUCCGUCCCAUAAUAUAAGU   1013 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345862 (LOC4345862), mRNA	uncharacterized LOC4345862(LOC4345862)	coding protein	psRNATarget
AK072137.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   |||=*|||||||||*||||||||= targets:3019   CUCUCUCCGUCCCAUAAUAUAAGU   3042 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013128O11, full insert sequence	NA	coding protein	psRNATarget
AK288382.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   |||=*||||||||||||||*|||= targets:488   CUCUCUCCGUCCCAAAAUACAAGU   511 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090026M23, full insert sequence	NA	coding protein	psRNATarget
AK288011.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   =|||-|||||||||||||||||** targets:747   UUCC-UCCGUCCCAAAAUAUAAAA   769 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075116J02, full insert sequence	NA	coding protein	psRNATarget
XM_015766569.1	ncRNA:24   GAGGUAGGCAGGGUUUUAUAUUCG   1   =|||-|||||||||||||||||** targets:782   UUCC-UCCGUCCCAAAAUAUAAAA   804 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group forkhead box protein G1 (LOC4324335), mRNA	forkhead box protein G1(LOC4324335)	coding protein	psRNATarget