| ncRNA ID | ath-miR780.1 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr4:8504141-8504314 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 26 - UCUAGCAGCUGUUGAGCAGGU - 46 |
| Stem-loop(if miRNA) |
AU U U A A ------ ----A U - UCACAAACAUCAACA CAAGAU CAGAUAUU CACGAAGA AUCUGC UAACAGCU C GAGGA AUUGUGAUUU AUC GUU G |||||| |||||||| |||||||| |||||| |||||||| | ||||| |||||||||| ||| ||| C GUUUUA GUCUAUAA GUGCUUCU UGGACG GUUGUCGA G UUCCU UAACACUAAA UAG CAG U CG - U A C AUCUUU AUCAC - G GUAUUGCUAGGUACC |
| Stem-loop sequence | CAAGAUAUCAGAUAUUUCACGAAGAUAUCUGCAUAACAGCUACGAGGAAAUUGUGAUUUUAUCGUUUCACAAACAUCAACAGCUCCAUGGAUCGUUAUGGACGGAUAAAUCACAAUCACUAUCCUUUUUCUAGCAGCUGUUGAGCAGGUUUCUUCGUGAAUAUCUGGCAUUUUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_117566.1 |
|
0.0 | Arabidopsis thaliana hypothetical protein partial mRNA | hypothetical protein(AT4G14810) | coding protein | psRNATarget |
| 1 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 2 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
| 3 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |