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BaseInfo

ncRNA ID	novel_osa_miR3137
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:13359769-13359897 [+]
Reference genome	IRGSP-1.0
Source	SRR2040385;SRR2040393
Length	24
Mature sequence(if miRNA)	1 - AACCGGGACUAAAGAUCUGAUCUU - 24
Stem-loop(if miRNA)	--              AUCU           C         A           A         C   AACCGGGACUAAAG    GAUCUUUAGUC CGGUUGGUA CACCAACCGGG CUAAAGAUC C   ||||||||||||||    ||||||||||| ||||||||| ||||||||||| ||||||||| G   UUGGCCCUGAUUUC    CUAGAAAUCAG GCCAACCAU GUGGUUGGCCC GAUUUCUAG G GG              AAUU           A         C           C         U
Stem-loop sequence	AACCGGGACUAAAGAUCUGAUCUUUAGUCCCGGUUGGUAACACCAACCGGGACUAAAGAUCCCGGUGAUCUUUAGCCCCGGUUGGUGCUACCAACCGAGACUAAAGAUCUUAACUUUAGUCCCGGUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015755226.1	ncRNA:24   UUCUAGUC-UAGAAAUCAGGGCCAA   1   |||||*||-|||||||||||||||| targets:62   AAGAUGAGGAUCUUUAGUCCCGGUU   86 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK288438.1	ncRNA:24   UUCUAGUCUAGAAAUCAGGGCCAA   1   ==||*=|*|||||||||||||||| targets:2356   GGGACUAAAUCUUUAGUCCCGGUU   2379 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288598.1	ncRNA:24   UUCUAGU-CUAGAAAUCAGGGCCAA   1   |||-|=|-||||||||||||||||| targets:963   AAG-UUACGAUCUUUAGUCCCGGUU   986 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   UUCUAGUCUAGAAAUCAGGGCCAA   1   ****||=||||||||||||||||| targets:1253   CCCCUCGGAUCUUUAGUCCCGGUU   1276 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   UUCUAGUC-UAGAAAUCAGGGCCAA   1   ***|*|=|-|||||||||||||||| targets:1867   CCAACCGGUAUCUUUAGUCCCGGUU   1891 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   UUCUAGUCUAGAAAUCAGGGCCAA   1   ==||**|||||||||||||||||| targets:2190   GGGAAAAGAUCUUUAGUCCCGGUU   2213 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:24   UUCUAGUCUAGAAAUCAGGGCCAA   1   ==||*=|*|||||||||||||||| targets:1898   GGGACUAAAUCUUUAGUCCCGGUU   1921 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   UUCUAGUCUAGAAAUCAGGGCCAA   1   *|*||=*||||||||||||||||| targets:40   CAUAUUUGAUCUUUAGUCCCGGUU   63 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   UUCUAGUCUAGAAAUCAGGGCCAA   1   |||**|*||||||||||||||||| targets:966   AAGUGCUGAUCUUUAGUCCCGGUU   989 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
AK288191.1	ncRNA:24   UUCU----AGUCUAGAAAUCAGGGCCAA   1   *=||----|=*||||||||||||||||| targets:1551   UGGAACUUUUUGAUCUUUAGUCCCGGUU   1578 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090007A11, full insert sequence	NA	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   UUCUAGU-CUAGAAAUCAGGGCCAA   1   ***||*|-||||||||||||||||| targets:135   CUAAUAAUGAUCUUUAGUCCCGGUU   159 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK121178.1	ncRNA:24   UUC--UAGU-CUAGAAAUCAGGGCCAA   1   *||--=|*|-||||||||||||||||| targets:1898   UAGUAGUGACGAUCUUUAGUCCCGGUU   1924 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget