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BaseInfo

ncRNA ID	novel_osa_miR3136
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:1762340-1762510 [-]
Reference genome	IRGSP-1.0
Source	SRR2040385;SRR2040395;SRR1738216
Length	23
Mature sequence(if miRNA)	149 - UUUGCGUGUCCAACUUUGACUGU - 171
Stem-loop(if miRNA)	--   G         -C          C       A     UUUUU      UUCGUAUUUUUAUUGGU      -U     AA    AU   U   UUU CGUGUCCAA  UUUGACUGUC GUCUUAU UGAAA     UUAUAA                 GUUAGA  GAUAA  CAUG  UAA A   ||| |||||||||  |||||||||| ||||||| |||||     ||||||                 ||||||  |||||  ||||  |||   AAA GUACGGGUU  AAACUGGCAG CAGAAUA ACUUU     AAUAUU                 UAAUUU  UUGUU  GUAC  AUU C CC   G         AC          A       A     --UUU      -------------UUUU      UU     CA    GU   U
Stem-loop sequence	UUUGCGUGUCCAACUUUGACUGUCCGUCUUAUAUGAAAUUUUUUUAUAAUUCGUAUUUUUAUUGGUGUUAGAUGAUAAAACAUGAUUAAUACUUUAUGCAUGACUUGUUUUUUUAAUUUUUUUAUAAUUUUUUCAAAUAAGACAGACGGUCAAACAUUGGGCAUGGAAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK071213.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   |||||||||||||||=||||||| targets:1118   ACAGUCAAAGUUGGAUACGCAAA   1140 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023087E24, full insert sequence	NA	coding protein	psRNATarget
XM_015757480.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   |||||||||||||||=||||||| targets:1168   ACAGUCAAAGUUGGAUACGCAAA   1190 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348155 (LOC4348155), mRNA	uncharacterized LOC4348155(LOC4348155)	coding protein	psRNATarget
AK100367.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   |||||||||||||||=||||||| targets:1118   ACAGUCAAAGUUGGAUACGCAAA   1140 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023083P20, full insert sequence	NA	coding protein	psRNATarget
AK068604.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   ||||||||||||||||||||||* targets:2544   ACAGUCAAAGUUGGACACGCAAC   2566 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013157G05, full insert sequence	NA	coding protein	psRNATarget
XM_015781687.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   ||||||||||||||||||||||* targets:2565   ACAGUCAAAGUUGGACACGCAAC   2587 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 92A1 (LOC4335348), transcript variant X1, mRNA	UDP-glycosyltransferase 92A1(LOC4335348)	coding protein	psRNATarget
AK242028.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   |||||||||||||||||||*||| targets:1620   ACAGUCAAAGUUGGACACGAAAA   1642 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence	NA	coding protein	psRNATarget
XM_015776706.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   |||||||||||||||||||*||| targets:1731   ACAGUCAAAGUUGGACACGAAAA   1753 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776705.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   |||||||||||||||||||*||| targets:1737   ACAGUCAAAGUUGGACACGAAAA   1759 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776704.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   |||||||||||||||||||*||| targets:1743   ACAGUCAAAGUUGGACACGAAAA   1765 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
AK287701.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   ||||||||||||*|||||||||* targets:3728   ACAGUCAAAGUUAGACACGCAAU   3750 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065130L06, full insert sequence	NA	coding protein	psRNATarget
XM_015788892.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   ||||||||||||*|||||||||* targets:3857   ACAGUCAAAGUUAGACACGCAAU   3879 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase FLS2 (LOC4340067), mRNA	LRR receptor-like serine/threonine-protein kinase FLS2(LOC4340067)	coding protein	psRNATarget
AK242553.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   |||||||||*|||||||||*||| targets:325   ACAGUCAAAAUUGGACACGGAAA   347 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence	NA	coding protein	psRNATarget
XM_015791114.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   |=|||||||*|||||||||*||| targets:4109   AUAGUCAAAAUUGGACACGGAAA   4131 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4344401), transcript variant X2, mRNA	protein NETWORKED 2A(LOC4344401)	coding protein	psRNATarget
XM_015791113.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   |=|||||||*|||||||||*||| targets:4141   AUAGUCAAAAUUGGACACGGAAA   4163 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4344401), transcript variant X1, mRNA	protein NETWORKED 2A(LOC4344401)	coding protein	psRNATarget
AK100615.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   |=|||||||*|||||||||*||| targets:4218   AUAGUCAAAAUUGGACACGGAAA   4240 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023108B01, full insert sequence	NA	coding protein	psRNATarget
XM_015762457.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   ||=*|=|||||||||||||*||| targets:2786   ACGAUUAAAGUUGGACACGAAAA   2808 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X4, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget
XM_015762455.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   ||=*|=|||||||||||||*||| targets:2970   ACGAUUAAAGUUGGACACGAAAA   2992 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X2, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget
XM_015762456.1	ncRNA:23   UGUCAGUUUCAACCUGUGCGUUU   1   ||=*|=|||||||||||||*||| targets:2991   ACGAUUAAAGUUGGACACGAAAA   3013 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X3, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget