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BaseInfo

ncRNA ID	novel_osa_miR3131
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:12118982-12119190 [-]
Reference genome	IRGSP-1.0
Source	SRR2040385
Length	23
Mature sequence(if miRNA)	1 - AUUCGUUGUACUAGAAUAUGUCA - 23
Stem-loop(if miRNA)	--   CG C   A     UA          ----  G       A     -       G       A       A                A      A       A   ACA  U CUA UACAA  AAUCUGGACA    UA UCCCUCC UCUCA AAAAAAU AAUCUAG ACUAGAU UGAUAUAUUCUAGUAC AUGAAU UGGAUAU G   |||  | ||| |||||  ||||||||||    || ||||||| ||||| ||||||| ||||||| ||||||| |||||||||||||||| |||||| |||||||   UGU  A GAU AUGUU  UUAGAUCUGU    AU AGGGAGG AGGGU UUUUUUG UUGGAUC UGAUCUA ACUGUAUAGGAUCAUG UGCUUA AUCUGUA A AC   AU A   C     GC          CUAC  G       C     A       G       A       C                A      G       U
Stem-loop sequence	ACACGUCCUAAUACAAUAAAUCUGGACAUAGUCCCUCCAUCUCAAAAAAAUGAAUCUAGAACUAGAUAUGAUAUAUUCUAGUACAAUGAAUAUGGAUAUAGAUAUGUCUAGAUUCGUAGUACUAGGAUAUGUCACAUCUAGUACUAGGUUGGUUUUUUAUGGGACGGAGGGAGUACAUCUGUCUAGAUUCGUUGUACUAGAAUAUGUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015778607.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   ||||||||||||||||||||||| targets:1055   UGACAUAUUCUAGUACAACGAAU   1077 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group anthocyanidin reductase (LOC4337098), mRNA	anthocyanidin reductase(LOC4337098)	coding protein	psRNATarget
CT834276.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   ||||||||||||||||||||||* targets:1785   UGACAUAUUCUAGUACAACGAAC   1807 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110F09, full insert sequence	NA	coding protein	psRNATarget
AK120132.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   ||||||||||||||||||||||* targets:1880   UGACAUAUUCUAGUACAACGAAC   1902 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013027B10, full insert sequence	NA	coding protein	psRNATarget
XM_015780717.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   ||||||||||||||||||||||* targets:1881   UGACAUAUUCUAGUACAACGAAC   1903 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X5, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780715.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   ||||||||||||||||||||||* targets:1958   UGACAUAUUCUAGUACAACGAAC   1980 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X3, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780713.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   ||||||||||||||||||||||* targets:1975   UGACAUAUUCUAGUACAACGAAC   1997 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X1, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780718.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   ||||||||||||||||||||||* targets:1988   UGACAUAUUCUAGUACAACGAAC   2010 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X6, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780716.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   ||||||||||||||||||||||* targets:2171   UGACAUAUUCUAGUACAACGAAC   2193 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X4, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780714.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   ||||||||||||||||||||||* targets:2188   UGACAUAUUCUAGUACAACGAAC   2210 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X2, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
HI404157.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   ||||||||||||*|||||||||| targets:15   UGACAUAUUCUAAUACAACGAAU   37 Target Full Sequence	1.5	Sequence 2282 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236287.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   ||||||||||||*|||||||||| targets:15   UGACAUAUUCUAAUACAACGAAU   37 Target Full Sequence	1.5	Sequence 2282 from Patent EP2985353	NA	coding protein	psRNATarget
JB164618.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   ||||||||||||*|||||||||| targets:15   UGACAUAUUCUAAUACAACGAAU   37 Target Full Sequence	1.5	Sequence 2282 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015786406.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||=|||||=|||||=||||||| targets:3416   UGAUAUAUUUUAGUAUAACGAAU   3438 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative GDP-L-fucose synthase 2 (LOC4341698), mRNA	putative GDP-L-fucose synthase 2(LOC4341698)	coding protein	psRNATarget
AK070979.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||||||*|||||=||||||| targets:2265   UGACAUAUUAUAGUAUAACGAAU   2287 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023073D05, full insert sequence	NA	coding protein	psRNATarget
XM_015764276.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||||||*|||||=||||||| targets:2082   UGACAUAUUAUAGUAUAACGAAU   2104 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC4351262), transcript variant X3, mRNA	probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC4351262)	coding protein	psRNATarget
XM_015764277.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||||||*|||||=||||||| targets:2119   UGACAUAUUAUAGUAUAACGAAU   2141 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC4351262), transcript variant X4, mRNA	probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC4351262)	coding protein	psRNATarget
XM_015764274.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||||||*|||||=||||||| targets:2125   UGACAUAUUAUAGUAUAACGAAU   2147 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC4351262), transcript variant X1, mRNA	probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC4351262)	coding protein	psRNATarget
XM_015764275.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||||||*|||||=||||||| targets:2143   UGACAUAUUAUAGUAUAACGAAU   2165 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC4351262), transcript variant X2, mRNA	probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC4351262)	coding protein	psRNATarget
AK062145.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   *||||||*||||||||||||||| targets:157   AGACAUAAUCUAGUACAACGAAU   179 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-045-G09, full insert sequence	NA	coding protein	psRNATarget
LQ236225.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||=|*|||||||||=||||||| targets:14   UGAUACAUUCUAGUAUAACGAAU   36 Target Full Sequence	2.5	Sequence 2220 from Patent EP2985353	NA	coding protein	psRNATarget
LQ236225.1	ncRNA:23   AC-UGUAUAAGAUCAUGUUGCUUA   1   ||-|||*|||||||||=||||||| targets:42   UGUACACAUUCUAGUAUAACGAAU   65 Target Full Sequence	2.5	Sequence 2220 from Patent EP2985353	NA	coding protein	psRNATarget
HI404095.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||=|*|||||||||=||||||| targets:14   UGAUACAUUCUAGUAUAACGAAU   36 Target Full Sequence	2.5	Sequence 2220 from Patent EP2074227	NA	coding protein	psRNATarget
HI404095.1	ncRNA:23   AC-UGUAUAAGAUCAUGUUGCUUA   1   ||-|||*|||||||||=||||||| targets:42   UGUACACAUUCUAGUAUAACGAAU   65 Target Full Sequence	2.5	Sequence 2220 from Patent EP2074227	NA	coding protein	psRNATarget
JB164556.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||=|*|||||||||=||||||| targets:14   UGAUACAUUCUAGUAUAACGAAU   36 Target Full Sequence	2.5	Sequence 2220 from Patent EP2559767	NA	coding protein	psRNATarget
JB164556.1	ncRNA:23   AC-UGUAUAAGAUCAUGUUGCUUA   1   ||-|||*|||||||||=||||||| targets:42   UGUACACAUUCUAGUAUAACGAAU   65 Target Full Sequence	2.5	Sequence 2220 from Patent EP2559767	NA	coding protein	psRNATarget
AK242875.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||=|||||=||||||*|||||| targets:1775   UGAUAUAUUUUAGUACCACGAAU   1797 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090077K21, full insert sequence	NA	coding protein	psRNATarget
AK288458.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   ||=||||||*||||||||=|||| targets:1320   UGGCAUAUUAUAGUACAAUGAAU   1342 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget
LQ236482.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   *||||||*||||||||||=|||| targets:45   GGACAUAAUCUAGUACAAUGAAU   67 Target Full Sequence	2.5	Sequence 2477 from Patent EP2985353	NA	coding protein	psRNATarget
JB164813.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   *||||||*||||||||||=|||| targets:45   GGACAUAAUCUAGUACAAUGAAU   67 Target Full Sequence	2.5	Sequence 2477 from Patent EP2559767	NA	coding protein	psRNATarget
HI404352.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   *||||||*||||||||||=|||| targets:45   GGACAUAAUCUAGUACAAUGAAU   67 Target Full Sequence	2.5	Sequence 2477 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236075.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||*|||||||||||||*||| targets:13   UGACACAUUCUAGUACAACAAAU   35 Target Full Sequence	2.5	Sequence 2070 from Patent EP2985353	NA	coding protein	psRNATarget
HI403945.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||*|||||||||||||*||| targets:13   UGACACAUUCUAGUACAACAAAU   35 Target Full Sequence	2.5	Sequence 2070 from Patent EP2074227	NA	coding protein	psRNATarget
JB164406.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||*|||||||||||||*||| targets:13   UGACACAUUCUAGUACAACAAAU   35 Target Full Sequence	2.5	Sequence 2070 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236672.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||*|||||||||||||*||| targets:13   UGACACAUUCUAGUACAACAAAU   35 Target Full Sequence	2.5	Sequence 2667 from Patent EP2985353	NA	coding protein	psRNATarget
JB165003.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||*|||||||||||||*||| targets:13   UGACACAUUCUAGUACAACAAAU   35 Target Full Sequence	2.5	Sequence 2667 from Patent EP2559767	NA	coding protein	psRNATarget
HI404542.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||*|||||||||||||*||| targets:13   UGACACAUUCUAGUACAACAAAU   35 Target Full Sequence	2.5	Sequence 2667 from Patent EP2074227	NA	coding protein	psRNATarget
AK241705.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   *||=|*||||||||||||||||| targets:3340   GGAUACAUUCUAGUACAACGAAU   3362 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence	NA	coding protein	psRNATarget
AK071898.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||*|||*||||||||||||| targets:2680   UGACACAUUAUAGUACAACGAAU   2702 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013059B05, full insert sequence	NA	coding protein	psRNATarget
XM_015764610.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||*|||*||||||||||||| targets:2696   UGACACAUUAUAGUACAACGAAU   2718 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein NPY4 (LOC4352652), mRNA	BTB/POZ domain-containing protein NPY4(LOC4352652)	coding protein	psRNATarget
AK288631.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||||*||||||||||*|||||| targets:4118   UGACACAUUCUAGUACUACGAAU   4140 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
JB164293.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||=|*||||||||||*|||||| targets:4   UGAUACAUUCUAGUACUACGAAU   26 Target Full Sequence	2.5	Sequence 1957 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235962.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||=|*||||||||||*|||||| targets:4   UGAUACAUUCUAGUACUACGAAU   26 Target Full Sequence	2.5	Sequence 1957 from Patent EP2985353	NA	coding protein	psRNATarget
HI403832.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||=|*||||||||||*|||||| targets:4   UGAUACAUUCUAGUACUACGAAU   26 Target Full Sequence	2.5	Sequence 1957 from Patent EP2074227	NA	coding protein	psRNATarget
AK288602.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   |||=||*|||||*|||||||||| targets:772   UGAUAUUUUCUAAUACAACGAAU   794 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090052H23, full insert sequence	NA	coding protein	psRNATarget
LQ236085.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   *||||||**|||||||||||||| targets:29   GGACAUAACCUAGUACAACGAAU   51 Target Full Sequence	2.0	Sequence 2080 from Patent EP2985353	NA	coding protein	psRNATarget
HI403955.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   *||||||**|||||||||||||| targets:29   GGACAUAACCUAGUACAACGAAU   51 Target Full Sequence	2.0	Sequence 2080 from Patent EP2074227	NA	coding protein	psRNATarget
JB164416.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   *||||||**|||||||||||||| targets:29   GGACAUAACCUAGUACAACGAAU   51 Target Full Sequence	2.0	Sequence 2080 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015784597.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   *||||||**|||||||||||||| targets:2383   GGACAUAACCUAGUACAACGAAU   2405 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784596.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   *||||||**|||||||||||||| targets:2383   GGACAUAACCUAGUACAACGAAU   2405 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784593.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   *||||||**|||||||||||||| targets:2383   GGACAUAACCUAGUACAACGAAU   2405 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784595.1	ncRNA:23   ACUGUAUAAGAUCAUGUUGCUUA   1   *||||||**|||||||||||||| targets:2383   GGACAUAACCUAGUACAACGAAU   2405 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget