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BaseInfo

ncRNA ID	novel_osa_miR3129
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:18353454-18353567 [-]
Reference genome	IRGSP-1.0
Source	SRR2040385
Length	21
Mature sequence(if miRNA)	94 - UAAGACUUUUUAGCAUUGCCU - 114
Stem-loop(if miRNA)	--                   C     U   U     A     A            U   UAAGACUUUUUAGCAUUGC UACAU CAU UAGAU UUAAU AAUCUAGACAUA G   ||||||||||||||||||| ||||| ||| ||||| ||||| ||||||||||||   AUUCUGAAAGAUCGUAACG GUGUA GUA AUUUA AAUUA UUAGAUUUGUGU C AC                   A     U   U     C     C            A
Stem-loop sequence	UAAGACUUUUUAGCAUUGCCUACAUUCAUUUAGAUAUUAAUAAAUCUAGACAUAUGCAUGUGUUUAGAUUCAUUAACAUUUAUAUGUAUGUGAGCAAUGCUAGAAAGUCUUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015757225.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =|||||||||||||||||||| targets:2394   GGGCAAUGCUAAAAAGUCUUA   2414 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g08610 (LOC4348896), mRNA	pentatricopeptide repeat-containing protein At1g08610(LOC4348896)	coding protein	psRNATarget
AK103437.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =|||||||||||||||||||| targets:2466   GGGCAAUGCUAAAAAGUCUUA   2486 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J033129C05, full insert sequence	NA	coding protein	psRNATarget
BT131987.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   *|||||||||||||||||||| targets:38   CGGCAAUGCUAAAAAGUCUUA   58 Target Full Sequence	0.0	Oryza sativa clone RRlibB00014 mRNA sequence	NA	coding protein	psRNATarget
LQ236076.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =|||||||||||=|||||||| targets:88   GGGCAAUGCUAAGAAGUCUUA   108 Target Full Sequence	1.5	Sequence 2071 from Patent EP2985353	NA	coding protein	psRNATarget
HI403946.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =|||||||||||=|||||||| targets:88   GGGCAAUGCUAAGAAGUCUUA   108 Target Full Sequence	1.5	Sequence 2071 from Patent EP2074227	NA	coding protein	psRNATarget
JB164407.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =|||||||||||=|||||||| targets:88   GGGCAAUGCUAAGAAGUCUUA   108 Target Full Sequence	1.5	Sequence 2071 from Patent EP2559767	NA	coding protein	psRNATarget
CT828736.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   *|||||||||||||||||||| targets:832   CGGCAAUGCUAAAAAGUCUUA   852 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA125N05, full insert sequence	NA	coding protein	psRNATarget
CT832555.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   *|||||||||||||||||||| targets:1440   CGGCAAUGCUAAAAAGUCUUA   1460 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110J22, full insert sequence	NA	coding protein	psRNATarget
XM_015790768.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:6   GGGCAAUGCUAGAAAGUCUUA   26 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9268710 (LOC9268710), transcript variant X2, mRNA	uncharacterized LOC9268710(LOC9268710)	coding protein	psRNATarget
AK068770.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   *|||||||||||||||||||| targets:1691   CGGCAAUGCUAAAAAGUCUUA   1711 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013169P07, full insert sequence	NA	coding protein	psRNATarget
XM_015790767.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:6   GGGCAAUGCUAGAAAGUCUUA   26 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9268710 (LOC9268710), transcript variant X1, mRNA	uncharacterized LOC9268710(LOC9268710)	coding protein	psRNATarget
XM_015767451.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   *|||||||||||||||||||| targets:1447   CGGCAAUGCUAAAAAGUCUUA   1467 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328324 (LOC4328324), transcript variant X2, mRNA	uncharacterized LOC4328324(LOC4328324)	coding protein	psRNATarget
XM_015767450.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   *|||||||||||||||||||| targets:1447   CGGCAAUGCUAAAAAGUCUUA   1467 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328324 (LOC4328324), transcript variant X1, mRNA	uncharacterized LOC4328324(LOC4328324)	coding protein	psRNATarget
AK070155.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   *|||||||||||||||||||| targets:1441   CGGCAAUGCUAAAAAGUCUUA   1461 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023047M11, full insert sequence	NA	coding protein	psRNATarget
AK287948.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:944   GGGCAAUGCUAGAAAGUCUUA   964 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075028D01, full insert sequence	NA	coding protein	psRNATarget
XM_015755249.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:823   GGGCAAUGCUAGAAAGUCUUA   843 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347372 (LOC4347372), mRNA	uncharacterized LOC4347372(LOC4347372)	coding protein	psRNATarget
AK060129.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||=||||||||||||||||| targets:949   GGGUAAUGCUAAAAAGUCUUA   969 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:006-309-A10, full insert sequence	NA	coding protein	psRNATarget
CT836330.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:910   GGGCAAUGCUAGAAAGUCUUA   930 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN072K19, full insert sequence	NA	coding protein	psRNATarget
XM_015795948.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:1094   GGGCAAUGCUAGAAAGUCUUA   1114 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 60S ribosomal protein L18a-like protein (LOC4326318), mRNA	60S ribosomal protein L18a-like protein(LOC4326318)	coding protein	psRNATarget
AK241537.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:912   GGGCAAUGCUAGAAAGUCUUA   932 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065173J04, full insert sequence	NA	coding protein	psRNATarget
XM_015757964.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||=||||||||||||||||| targets:992   GGGUAAUGCUAAAAAGUCUUA   1012 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein YLS9 (LOC4349292), transcript variant X1, mRNA	protein YLS9(LOC4349292)	coding protein	psRNATarget
AK070336.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:1555   GGGCAAUGCUAGAAAGUCUUA   1575 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023047B14, full insert sequence	NA	coding protein	psRNATarget
XM_015794357.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:1404   GGGCAAUGCUAGAAAGUCUUA   1424 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327949 (LOC4327949), mRNA	uncharacterized LOC4327949(LOC4327949)	coding protein	psRNATarget
AK107207.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:539   GGGCAAUGCUAGAAAGUCUUA   559 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-125-B10, full insert sequence	NA	coding protein	psRNATarget
XM_015778632.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:2579   GGGCAAUGCUAGAAAGUCUUA   2599 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glycerophosphodiester phosphodiesterase GDPDL3 (LOC4336129), mRNA	glycerophosphodiester phosphodiesterase GDPDL3(LOC4336129)	coding protein	psRNATarget
XM_015766247.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:2584   GGGCAAUGCUAGAAAGUCUUA   2604 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107277300), mRNA	putative receptor protein kinase ZmPK1(LOC107277300)	coding protein	psRNATarget
AK242012.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||||||||=||| targets:758   GGGCAAUGCUAAAAAGUUUUA   778 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075106H22, full insert sequence	NA	coding protein	psRNATarget
AK288472.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   |||=|||||||=||||||||| targets:1504   AGGUAAUGCUAGAAAGUCUUA   1524 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090037K20, full insert sequence	NA	coding protein	psRNATarget
AK120530.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:1895   GGGCAAUGCUAGAAAGUCUUA   1915 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013127H10, full insert sequence	NA	coding protein	psRNATarget
XM_015769168.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:2762   GGGCAAUGCUAGAAAGUCUUA   2782 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable splicing factor 3A subunit 1 (LOC4328860), transcript variant X3, mRNA	probable splicing factor 3A subunit 1(LOC4328860)	coding protein	psRNATarget
AK288429.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||||||||||=||||||||| targets:2560   GGGCAAUGCUAGAAAGUCUUA   2580 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090033C09, full insert sequence	NA	coding protein	psRNATarget
AK104174.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||=|||||||=||||||||| targets:752   GGGUAAUGCUAGAAAGUCUUA   772 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-301-C05, full insert sequence	NA	coding protein	psRNATarget
AK067462.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||=|||||||=||||||||| targets:753   GGGUAAUGCUAGAAAGUCUUA   773 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013102C12, full insert sequence	NA	coding protein	psRNATarget
AK071843.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||=|||||||=||||||||| targets:887   GGGUAAUGCUAGAAAGUCUUA   907 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023117M08, full insert sequence	NA	coding protein	psRNATarget
CT834453.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||=|||||||=||||||||| targets:885   GGGUAAUGCUAGAAAGUCUUA   905 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115M14, full insert sequence	NA	coding protein	psRNATarget
XM_015772707.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =||=|||||||=||||||||| targets:1078   GGGUAAUGCUAGAAAGUCUUA   1098 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein ELF4-LIKE 3 (LOC4333090), mRNA	protein ELF4-LIKE 3(LOC4333090)	coding protein	psRNATarget
XM_015779139.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =|||||||*|||||||||||| targets:1005   GGGCAAUGGUAAAAAGUCUUA   1025 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group fasciclin-like arabinogalactan protein 7 (LOC4336128), mRNA	fasciclin-like arabinogalactan protein 7(LOC4336128)	coding protein	psRNATarget
AK110545.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =|||||||*|||||||||||| targets:1011   GGGCAAUGGUAAAAAGUCUUA   1031 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-168-B08, full insert sequence	NA	coding protein	psRNATarget
CT833624.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   |*|||||||||=||||||||| targets:1129   AAGCAAUGCUAGAAAGUCUUA   1149 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046D04, full insert sequence	NA	coding protein	psRNATarget
AK066283.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   ||*||||||||=||||||||| targets:1035   AGACAAUGCUAGAAAGUCUUA   1055 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013063D15, full insert sequence	NA	coding protein	psRNATarget
XM_015777008.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   ||*||||||||=||||||||| targets:1455   AGACAAUGCUAGAAAGUCUUA   1475 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331744 (LOC4331744), mRNA	uncharacterized LOC4331744(LOC4331744)	coding protein	psRNATarget
XM_015764736.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =*|||||||||=||||||||| targets:855   GCGCAAUGCUAGAAAGUCUUA   875 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278197 (LOC107278197), transcript variant X2, mRNA	uncharacterized LOC107278197(LOC107278197)	coding protein	psRNATarget
XM_015764735.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =*|||||||||=||||||||| targets:1145   GCGCAAUGCUAGAAAGUCUUA   1165 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278197 (LOC107278197), transcript variant X1, mRNA	uncharacterized LOC107278197(LOC107278197)	coding protein	psRNATarget
XM_015755199.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =*|||||||||=||||||||| targets:1164   GAGCAAUGCUAGAAAGUCUUA   1184 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X1, mRNA	cinnamoyl-CoA reductase 1(LOC9270429)	coding protein	psRNATarget
XM_015755201.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =*|||||||||=||||||||| targets:1167   GAGCAAUGCUAGAAAGUCUUA   1187 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X2, mRNA	cinnamoyl-CoA reductase 1(LOC9270429)	coding protein	psRNATarget
AK072517.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =*|||||||||=||||||||| targets:1412   GAGCAAUGCUAGAAAGUCUUA   1432 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023133J02, full insert sequence	NA	coding protein	psRNATarget
AK070816.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   |*|=|||||||=||||||||| targets:1361   AAGUAAUGCUAGAAAGUCUUA   1381 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023066M01, full insert sequence	NA	coding protein	psRNATarget
AK288786.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   |*|=|||||||=||||||||| targets:3740   AUGUAAUGCUAGAAAGUCUUA   3760 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090069L01, full insert sequence	NA	coding protein	psRNATarget
XM_015766553.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =|||||*||||=||||||||| targets:617   GGGCAACGCUAGAAAGUCUUA   637 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766552.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =|||||*||||=||||||||| targets:1807   GGGCAACGCUAGAAAGUCUUA   1827 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766549.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =|||||*||||=||||||||| targets:2421   GGGCAACGCUAGAAAGUCUUA   2441 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766551.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =|||||*||||=||||||||| targets:2787   GGGCAACGCUAGAAAGUCUUA   2807 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766550.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =|||||*||||=||||||||| targets:2787   GGGCAACGCUAGAAAGUCUUA   2807 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766546.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   =|||||*||||=||||||||| targets:2787   GGGCAACGCUAGAAAGUCUUA   2807 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
AK101666.1	ncRNA:21   UCCGUUACGAUUUUUCAGAAU   1   **|||=|||||=||||||||| targets:1688   UAGCAGUGCUAGAAAGUCUUA   1708 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033057N11, full insert sequence	NA	coding protein	psRNATarget