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BaseInfo

ncRNA ID	novel_osa_miR3123
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:29850908-29850983 [-]
Reference genome	IRGSP-1.0
Source	SRR2040385
Length	22
Mature sequence(if miRNA)	55 - AGUAUACGGACACAAAUUUAAA - 76
Stem-loop(if miRNA)	--   A        CA     A    AUUAAACACAGA   AGU UACGGACA  AAUUU AAGU            C   ||| ||||||||  ||||| ||||            U   UCA AUGUCUGU  UUGGA UUUA            A CG   A        -A     C    AACAAAACAAUA
Stem-loop sequence	AGUAUACGGACACAAAUUUAAAGUAUUAAACACAGACUAAUAACAAAACAAAUUUCAGGUUAUGUCUGUAAACUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288216.1	ncRNA:22   AAAUUUAAACACAGGCAUAUGA   1   |||||||*|||||||||||||| targets:793   UUUAAAUGUGUGUCCGUAUACU   814 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget
XM_015769825.1	ncRNA:22   AAAUUUAAACACAGGCAUAUGA   1   |||||||*|||||||||||||| targets:788   UUUAAAUGUGUGUCCGUAUACU   809 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
AK288343.1	ncRNA:22   AAAUUUAAACACAGGCAUAUGA   1   |||||||*||||*||||||||| targets:416   UUUAAAUGUGUGCCCGUAUACU   437 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090023K08, full insert sequence	NA	coding protein	psRNATarget
XM_015759537.1	ncRNA:22   AAAUUUAAACACAGGCAUAUGA   1   ||*=|||*|||||||||||||| targets:9   UUCGAAUGUGUGUCCGUAUACU   30 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group chitinase 2 (LOC4348634), mRNA	chitinase 2(LOC4348634)	coding protein	psRNATarget
AK288937.1	ncRNA:22   AAAUUUAAACACAGGCAUAUGA   1   ||*||||*|||||||||||||* targets:30   UUCAAAUGUGUGUCCGUAUACG   51 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090082N15, full insert sequence	NA	coding protein	psRNATarget
XM_015776819.1	ncRNA:22   AAAUUUAAACACAGGCAUAUGA   1   ||*||||*|||||||||||||* targets:15   UUCAAAUGUGUGUCCGUAUACG   36 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group fatty acyl-CoA reductase 2 (LOC4331746), mRNA	fatty acyl-CoA reductase 2(LOC4331746)	coding protein	psRNATarget
AK288762.1	ncRNA:22   AAAUUUAAACACAGGCAUAUGA   1   ||*||||*|||||||||||||* targets:105   UUGAAAUGUGUGUCCGUAUACG   126 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090067F13, full insert sequence	NA	coding protein	psRNATarget