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BaseInfo

ncRNA ID	novel_osa_miR3121
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:35422199-35422420 [-]
Reference genome	IRGSP-1.0
Source	SRR2040385
Length	20
Mature sequence(if miRNA)	203 - AUAAGAUGUUUUGGCUUUGA - 222
Stem-loop(if miRNA)	--AUAA               A      C      A             C         -AA                --UCG      GG  AA       UAAA    UAU       GAUGUUUUGGCUUUG UCAAAG CAAACU UUUUAAGUUUGAC AAGUUUAUA   AAAUAUAGUAAUAUUU     AUCAAA  UA  UUUAUUA    AAUA   U       ||||||||||||||| |||||| |||||| ||||||||||||| |||||||||   ||||||||||||||||     ||||||  ||  |||||||    ||||       CUACAAAAUUGAAAC AGUUUC GUUUGA GAAGUUCAAACUG UUCAAAUAU   UUUAUAUUAUUAUAAA     UGGUUU  AU  AAAUAAU    UUAU   U AACAUG               C      A      C             A         CUG                UGUAA      -A  CA       UUAA    UAA
Stem-loop sequence	AUAAGAUGUUUUGGCUUUGAUCAAAGCCAAACUAUUUUAAGUUUGACCAAGUUUAUAAAAAAUAUAGUAAUAUUUUCGAUCAAAGGUAAAUUUAUUAUAAAAAUAUAUUUAAUUAUUAAUUUAAUAAAACUAAUUUGGUAAUGUAAAUAUUAUUAUAUUUGUCUAUAAACUUAGUCAAACUUGAAGCAGUUUGACUUUGACCAAAGUUAAAACAUCGUACAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK243096.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   *|||||=||||||||||||| targets:2012   CCAAAGUCAAAACAUCUUAU   2031 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J100024A13, full insert sequence	NA	coding protein	psRNATarget
XM_015756152.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   *|||||=||||||||||||| targets:1983   CCAAAGUCAAAACAUCUUAU   2002 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group basic blue protein (LOC4347927), mRNA	basic blue protein(LOC4347927)	coding protein	psRNATarget
CT835003.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   *|||||=||||||=|||||| targets:375   CCAAAGUCAAAACGUCUUAU   394 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054K08, full insert sequence	NA	coding protein	psRNATarget
CT837874.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   *|||||==|||||||||||| targets:330   CCAAAGUUAAAACAUCUUAU   349 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence	NA	coding protein	psRNATarget
CT833794.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   *|||||=|||||||||||=| targets:645   CCAAAGUCAAAACAUCUUGU   664 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042F13, full insert sequence	NA	coding protein	psRNATarget
XM_015793379.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   *|||||=|=||||||||||| targets:1975   ACAAAGUCGAAACAUCUUAU   1994 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B2-like (LOC107281855), mRNA	UDP-glycosyltransferase 89B2-like(LOC107281855)	coding protein	psRNATarget
AK242901.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   *|||||=||||||=|||||| targets:1428   CCAAAGUCAAAACGUCUUAU   1447 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090081L24, full insert sequence	NA	coding protein	psRNATarget
XM_015788305.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   *|||||=||||||=|||||| targets:1478   CCAAAGUCAAAACGUCUUAU   1497 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/FBD/LRR-repeat protein At1g13570 (LOC4340210), transcript variant X1, mRNA	F-box/FBD/LRR-repeat protein At1g13570(LOC4340210)	coding protein	psRNATarget
XM_015757710.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   *|||||=||||||=|||||| targets:52   CCAAAGUCAAAACGUCUUAU   71 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278283 (LOC107278283), mRNA	uncharacterized LOC107278283(LOC107278283)	coding protein	psRNATarget
AK288313.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   *|||||=||||||=|||||| targets:1038   CCAAAGUCAAAACGUCUUAU   1057 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget
AK101140.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   **||=||||||||||||||| targets:1112   GAAAGGCCAAAACAUCUUAU   1131 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033026L10, full insert sequence	NA	coding protein	psRNATarget
AK240897.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   |=||*|=||||||||||||| targets:1690   UUAAUGUCAAAACAUCUUAU   1709 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J065032L17, full insert sequence	NA	coding protein	psRNATarget
AK241756.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   ||||||*|||||||*||||| targets:766   UCAAAGACAAAACAGCUUAU   785 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065204D07, full insert sequence	NA	coding protein	psRNATarget
XM_015789452.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   ||||||*|||||||*||||| targets:807   UCAAAGACAAAACAGCUUAU   826 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein 13 (LOC4342452), transcript variant X2, mRNA	F-box/LRR-repeat protein 13(LOC4342452)	coding protein	psRNATarget
XM_015789453.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   ||||||*|||||||*||||| targets:830   UCAAAGACAAAACAGCUUAU   849 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein 13 (LOC4342452), transcript variant X3, mRNA	F-box/LRR-repeat protein 13(LOC4342452)	coding protein	psRNATarget
XM_015789451.1	ncRNA:20   AGUUUCGGUUUUGUAGAAUA   1   ||||||*|||||||*||||| targets:835   UCAAAGACAAAACAGCUUAU   854 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein 13 (LOC4342452), transcript variant X1, mRNA	F-box/LRR-repeat protein 13(LOC4342452)	coding protein	psRNATarget