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BaseInfo

ncRNA ID	novel_osa_miR3119
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:22495203-22495382 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR4407779;SRR1556020
Length	24
Mature sequence(if miRNA)	157 - AAACAUGUAAGAAAAAAUCAACGG - 180
Stem-loop(if miRNA)	--             C                              A    C    UUAUAAUUUAUUU   U     U   UUU     UCAUACU   GUUGAUUUUUUCU ACAUGUUUGACCAUUCGUCUUAUUCAAAAA UUUA GUAA             UGU AUGAG UGU   AUCAC       A   ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||             ||| ||||| |||   |||||   CAACUAAAAAAGA UGUACAAACUGGUAAGCAGAAUGAGUUUUU AAAU CGUU             ACA UAUUC AUA   UAGUG       C GG             A                              A    A    ------------U   -     U   -UU     UAAAUUU
Stem-loop sequence	GUUGAUUUUUUCUCACAUGUUUGACCAUUCGUCUUAUUCAAAAAAUUUACGUAAUUAUAAUUUAUUUUGUUAUGAGUUGUUUUAUCACUCAUACUACUUUAAAUGUGAUUUAUAUCUUAUACAUUUGCAUAAAAUUUUUGAGUAAGACGAAUGGUCAAACAUGUAAGAAAAAAUCAACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837513.1	ncRNA:24   GGCAACUAAAAAAGAAUGUACAAA   1   |||||||*|||||||||||||||| targets:479   CCGUUGACUUUUUCUUACAUGUUU   502 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA001P06, full insert sequence	NA	coding protein	psRNATarget
AK288179.1	ncRNA:24   GGCAACUAAAAAAGAAUGUACAAA   1   |||||||*|||||||*|||||||| targets:3596   CCGUUGACUUUUUCUCACAUGUUU   3619 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090005B04, full insert sequence	NA	coding protein	psRNATarget
AK068475.1	ncRNA:24   GGCAACUAAAAAAGAAUGUACAAA   1   |||||||*|||||||*|||||||| targets:2175   CCGUUGACUUUUUCUCACAUGUUU   2198 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013152H07, full insert sequence	NA	coding protein	psRNATarget
AK288827.1	ncRNA:24   GGCAACUAAAAAAGAAUGUACAAA   1   |||||||*|||||||*|||||||| targets:1245   CCGUUGACUUUUUCUCACAUGUUU   1268 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090073J08, full insert sequence	NA	coding protein	psRNATarget
XM_015766756.1	ncRNA:24   GGCAACUAAAAAAGAAUGUACAAA   1   |||||||*|||||||*|||||||| targets:1833   CCGUUGACUUUUUCUCACAUGUUU   1856 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable glucuronosyltransferase Os01g0926600 (LOC4327242), mRNA	probable glucuronosyltransferase Os01g0926600(LOC4327242)	coding protein	psRNATarget
XM_015783321.1	ncRNA:24   GGCAACUAAAAAAGAAUGUACAAA   1   |||||||*|||||||*|||||||| targets:1676   CCGUUGACUUUUUCUCACAUGUUU   1699 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group anthocyanidin 5,3-O-glucosyltransferase (LOC4339395), mRNA	anthocyanidin 5,3-O-glucosyltransferase(LOC4339395)	coding protein	psRNATarget