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BaseInfo

ncRNA ID	novel_osa_miR3117
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:21658480-21658558 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555749;SRR2097778;SRR2098560;SRR2098822;SRR2098823;SRR2099436;SRR2099568;SRR2099745;SRR4407777;SRR4407779;SRR1556016;SRR1556020;SRR1654491
Length	24
Mature sequence(if miRNA)	1 - ACCAAAUCAUUUUCGAUCGUUGGA - 24
Stem-loop(if miRNA)	--                            A AAU   UA   ACCAAAUCAUUUUCGAUCGUUGGAUCUA C   GGC  U   |||||||||||||||||||||||||||| |   |||   UGGUUUAGUAAAGGUUAGCAACCUAGAU G   CCG  C CA                            C -AC   UC
Stem-loop sequence	ACCAAAUCAUUUUCGAUCGUUGGAUCUAACAAUGGCUAUCCUGCCCAGCUAGAUCCAACGAUUGGAAAUGAUUUGGUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100297.1	ncRNA:24   AGGUUGCUAGCUUUUACUAAACCA   1   ||||||||||||||||*||||||| targets:1358   UCCAACGAUCGAAAAUAAUUUGGU   1381 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023077B14, full insert sequence	NA	coding protein	psRNATarget
XM_015793616.1	ncRNA:24   AGGUUGCUAGCUUUUACUAAACCA   1   ||||||||||||||||*||||||| targets:1533   UCCAACGAUCGAAAAUAAUUUGGU   1556 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable auxin efflux carrier component 4 (LOC4346116), mRNA	probable auxin efflux carrier component 4(LOC4346116)	coding protein	psRNATarget
XM_015790062.1	ncRNA:24   AGGUUGCUAGCUUUUACUAAACCA   1   ||*||||||*|||||||||||*|| targets:2370   UCAAACGAUAGAAAAUGAUUUAGU   2393 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group L-type lectin-domain containing receptor kinase IV.1 (LOC9268564), mRNA	L-type lectin-domain containing receptor kinase IV.1(LOC9268564)	coding protein	psRNATarget
XM_015789414.1	ncRNA:24   AGGU--UGCUAGCUUUUACUAAACCA   1   |===--|=|||=*||||||||||||| targets:914   UUUGGUAUGAUUAAAAAUGAUUUGGU   939 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4323972 (LOC4323972), mRNA	uncharacterized LOC4323972(LOC4323972)	coding protein	psRNATarget
AK242309.1	ncRNA:24   AGGU--UGCUAGCUUUUACUAAACCA   1   |===--|=|||=*||||||||||||| targets:1179   UUUGGUAUGAUUAAAAAUGAUUUGGU   1204 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J075194B21, full insert sequence	NA	coding protein	psRNATarget