Search result

BaseInfo

ncRNA ID novel_osa_miR3116
Species Oryza sativa
Class miRNA
Genome position Chr1:23329348-23329439 [+]
Reference genome IRGSP-1.0
Source SRR2040385
Length 25
Mature sequence(if miRNA) 1 - AACAUUUUCCACAUUUAUAUUGAUG - 25
Stem-loop(if miRNA) --AA       C        A                      GAU
    CAUUUUC ACAUUUAU UUGAUGUUAAUGAAUCUAGAUG   A
    ||||||| |||||||| ||||||||||||||||||||||
    GUAAAGG UGUAAGUA AACUACAAUUACUUAGAUUUGU   U
GAUC       A        C                      AUA
Stem-loop sequence AACAUUUUCCACAUUUAUAUUGAUGUUAAUGAAUCUAGAUGGAUAUAUAUGUUUAGAUUCAUUAACAUCAACAUGAAUGUAGGAAAUGCUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT837739.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||||||||||||||||||
targets:1452   CAUCAAUAUAAAUGUGGAAAAUGUU   1476

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA048L02, full insert sequence NA coding protein psRNATarget
CT828989.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||||
targets:295   CAUCAAUAUGAAUGUGGAAAAUGUU   319

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA050N17, full insert sequence NA coding protein psRNATarget
XM_015772126.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||||
targets:2377   CAUCAAUAUGAAUGUGGAAAAUGUU   2401

1.0 PREDICTED: Oryza sativa Japonica Group probable polygalacturonase At1g80170 (LOC4328189), mRNA probable polygalacturonase At1g80170(LOC4328189) coding protein psRNATarget
CT834624.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||=|||||||
targets:1156   CAUCAAUAUGAAUGUGGGAAAUGUU   1180

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA040F18, full insert sequence NA coding protein psRNATarget
XM_015758389.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||||||||||||||||*|
targets:2200   CAUCAAUAUAAAUGUGGAAAAUGCU   2224

1.5 PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 8.3-like (LOC107276819), mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC107276819) coding protein psRNATarget
AK070012.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||||||||||||||||*|
targets:2403   CAUCAAUAUAAAUGUGGAAAAUGCU   2427

1.5 Oryza sativa Japonica Group cDNA clone:J023037B16, full insert sequence NA coding protein psRNATarget
AK121342.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||||||||||||||||*|
targets:4664   CAUCAAUAUAAAUGUGGAAAAUGCU   4688

1.5 Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence NA coding protein psRNATarget
XM_015789040.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||||||||||||||||*|
targets:4830   CAUCAAUAUAAAUGUGGAAAAUGCU   4854

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA uncharacterized LOC9266525(LOC9266525) coding protein psRNATarget
CT833491.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||*|
targets:92   CAUCAAUAUGAAUGUGGAAAAUGCU   116

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA011O12, full insert sequence NA coding protein psRNATarget
CT837528.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||*|
targets:902   CAUCAAUAUGAAUGUGGAAAAUGCU   926

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037B21, full insert sequence NA coding protein psRNATarget
CT837839.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||*|
targets:1005   CAUCAAUAUGAAUGUGGAAAAUGCU   1029

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105C15, full insert sequence NA coding protein psRNATarget
XM_015768090.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||*|
targets:1287   CAUCAAUAUGAAUGUGGAAAAUGCU   1311

2.5 PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X2, mRNA mediator-associated protein 2(LOC4326241) coding protein psRNATarget
CT837594.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||*|
targets:1360   CAUCAAUAUGAAUGUGGAAAAUGCU   1384

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN021M15, full insert sequence NA coding protein psRNATarget
XM_015768116.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||*|
targets:1396   CAUCAAUAUGAAUGUGGAAAAUGCU   1420

2.5 PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X5, mRNA mediator-associated protein 2(LOC4326241) coding protein psRNATarget
AK287994.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||*|
targets:1539   CAUCAAUAUGAAUGUGGAAAAUGCU   1563

2.5 Oryza sativa Japonica Group cDNA, clone: J075099E21, full insert sequence NA coding protein psRNATarget
XM_015782137.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||*|
targets:1588   CAUCAAUAUGAAUGUGGAAAAUGCU   1612

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339294 (LOC4339294), mRNA uncharacterized LOC4339294(LOC4339294) coding protein psRNATarget
AK064965.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||=|||||||||||||||||||*|
targets:1708   CAUUAAUAUAAAUGUGGAAAAUGAU   1732

1.5 Oryza sativa Japonica Group cDNA clone:J013001B01, full insert sequence NA coding protein psRNATarget
XM_015793141.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||*|
targets:1994   CAUCAAUAUGAAUGUGGAAAAUGCU   2018

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344622 (LOC4344622), mRNA uncharacterized LOC4344622(LOC4344622) coding protein psRNATarget
AK120060.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||*|
targets:2146   CAUCAAUAUGAAUGUGGAAAAUGCU   2170

2.5 Oryza sativa Japonica Group cDNA clone:J013001G01, full insert sequence NA coding protein psRNATarget
XM_015768099.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||*|
targets:2583   CAUCAAUAUGAAUGUGGAAAAUGCU   2607

2.5 PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X3, mRNA mediator-associated protein 2(LOC4326241) coding protein psRNATarget
XM_015768108.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||*|
targets:2740   CAUCAAUAUGAAUGUGGAAAAUGCU   2764

2.5 PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X4, mRNA mediator-associated protein 2(LOC4326241) coding protein psRNATarget
AK241705.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=|||||||||||||*|
targets:4054   CAUCAAUAUGAAUGUGGAAAAUGCU   4078

2.5 Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence NA coding protein psRNATarget
XM_015761673.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=||||||*||||||||
targets:5826   CAUCAAUAUGAAUGUGAAAAAUGUU   5850

2.5 PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X2, mRNA regulatory-associated protein of TOR 2(LOC9266997) coding protein psRNATarget
XM_015761672.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||||||||=||||||*||||||||
targets:5830   CAUCAAUAUGAAUGUGAAAAAUGUU   5854

2.5 PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X1, mRNA regulatory-associated protein of TOR 2(LOC9266997) coding protein psRNATarget
XM_015778842.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  *||*|||||||||||||||||||||
targets:1157   AAUGAAUAUAAAUGUGGAAAAUGUU   1181

0.0 PREDICTED: Oryza sativa Japonica Group putative RING-H2 finger protein ATL50 (LOC4336763), mRNA putative RING-H2 finger protein ATL50(LOC4336763) coding protein psRNATarget
CT837593.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||=|||||=|||||||||||||*|
targets:165   CAUUAAUAUGAAUGUGGAAAAUGCU   189

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122C23, full insert sequence NA coding protein psRNATarget
XM_015778852.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  ||||=||||=|||||||||||||*|
targets:3   CAUCGAUAUGAAUGUGGAAAAUGCU   27

2.5 PREDICTED: Oryza sativa Japonica Group transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like (LOC107276663), mRNA transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like(LOC107276663) coding protein psRNATarget
AK071679.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||=|||||=|||||||||||||*|
targets:1861   CAUUAAUAUGAAUGUGGAAAAUGCU   1885

2.5 Oryza sativa Japonica Group cDNA clone:J023108I08, full insert sequence NA coding protein psRNATarget
XM_015777143.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||=|||||=|||||||||||||*|
targets:1977   CAUUAAUAUGAAUGUGGAAAAUGCU   2001

2.5 PREDICTED: Oryza sativa Japonica Group lecithin-cholesterol acyltransferase-like 1 (LOC4333995), mRNA lecithin-cholesterol acyltransferase-like 1(LOC4333995) coding protein psRNATarget
CT833662.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  *||||||||=|||||||||||||*|
targets:1088   AAUCAAUAUGAAUGUGGAAAAUGCU   1112

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN049L15, full insert sequence NA coding protein psRNATarget
XM_015771202.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  ||||||||*||||||||||||||*|
targets:84   CAUCAAUAGAAAUGUGGAAAAUGCU   108

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278672 (LOC107278672), transcript variant X1, mRNA uncharacterized LOC107278672(LOC107278672) coding protein psRNATarget
XM_015771203.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  ||||||||*||||||||||||||*|
targets:84   CAUCAAUAGAAAUGUGGAAAAUGCU   108

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278672 (LOC107278672), transcript variant X2, mRNA uncharacterized LOC107278672(LOC107278672) coding protein psRNATarget
AK242586.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  =|||||*||||||||||||||||*|
targets:565   UAUCAAAAUAAAUGUGGAAAAUGCU   589

2.5 Oryza sativa Japonica Group cDNA, clone: J090010P05, full insert sequence NA coding protein psRNATarget
XM_015794898.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  =|||||*||||||||||||||||*|
targets:576   UAUCAAAAUAAAUGUGGAAAAUGCU   600

2.5 PREDICTED: Oryza sativa Japonica Group putative EG45-like domain containing protein 1 (LOC9267730), mRNA putative EG45-like domain containing protein 1(LOC9267730) coding protein psRNATarget
AK071746.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  =||*|||||||||||||||||||*|
targets:903   UAUAAAUAUAAAUGUGGAAAAUGCU   927

1.5 Oryza sativa Japonica Group cDNA clone:J023111G24, full insert sequence NA coding protein psRNATarget
XM_015786593.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  =||*|||||||||||||||||||*|
targets:1001   UAUAAAUAUAAAUGUGGAAAAUGCU   1025

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340983 (LOC4340983), mRNA uncharacterized LOC4340983(LOC4340983) coding protein psRNATarget
XM_015763560.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||*|||||=|||||||||||||*|
targets:1058   CAUGAAUAUGAAUGUGGAAAAUGCU   1082

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278415 (LOC107278415), mRNA uncharacterized LOC107278415(LOC107278415) coding protein psRNATarget
XM_015763234.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  ||||*||||=||||||||*||||||
targets:6357   CAUCUAUAUGAAUGUGGACAAUGUU   6381

2.5 PREDICTED: Oryza sativa Japonica Group F-box protein At5g25290 (LOC4326973), transcript variant X1, mRNA F-box protein At5g25290(LOC4326973) coding protein psRNATarget
AK111415.1
ncRNA:25   GUA-GUUAUAUUUACACCUUUUACAA   1
  |||-=||||||=||||||||||||*|
targets:1127   CAUAUAAUAUAGAUGUGGAAAAUGAU   1152

2.5 Oryza sativa Japonica Group cDNA clone:002-182-G02, full insert sequence NA coding protein psRNATarget
XM_015763160.1
ncRNA:25   GUA-GUUAUAUUUACACCUUUUACAA   1
  |||-=||||||=||||||||||||*|
targets:1132   CAUAUAAUAUAGAUGUGGAAAAUGAU   1157

2.5 PREDICTED: Oryza sativa Japonica Group acidic endochitinase (LOC4325066), mRNA acidic endochitinase(LOC4325066) coding protein psRNATarget
XM_015761417.1
ncRNA:25   GUAGUUAUAUUUACACCUUUUACAA   1
  |||*|||||*||||||||||||*||
targets:403   CAUAAAUAUCAAUGUGGAAAAUAUU   427

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270662 (LOC9270662), transcript variant X2, mRNA uncharacterized LOC9270662(LOC9270662) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.