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BaseInfo

ncRNA ID novel_osa_miR3112
Species Oryza sativa
Class miRNA
Genome position Chr8:20278127-20278191 [+]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1556011;SRR4407956;SRR1556020
Length 24
Mature sequence(if miRNA) 42 - AAUGGACCGCACGCGAAAAUGAGC - 65
Stem-loop(if miRNA) --C                      AAGA GA
   CAUUUUCGCGUGCGGUCCAUUU    G  C
   ||||||||||||||||||||||    |  C
   GUAAAAGCGCACGCCAGGUAAA    C  U
CGA                      AAGG AC
Stem-loop sequence CCAUUUUCGCGUGCGGUCCAUUUAAGAGGACCUCACGGAAAAAUGGACCGCACGCGAAAAUGAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK063216.1
ncRNA:24   CGAG-UAAAAGCGCACGCCAGGUAA   1
  **||-|||*||*|||||||||||||
targets:690   AAUCGAUUAUCCCGUGCGGUCCAUU   714

2.0 Oryza sativa Japonica Group cDNA clone:001-112-D12, full insert sequence NA coding protein psRNATarget