Search result

BaseInfo

ncRNA ID	novel_osa_miR3111
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:16200151-16200263 [+]
Reference genome	IRGSP-1.0
Source	SRR1298758;SRR1555749;SRR2097778;SRR2097779;SRR2098557;SRR2098822;SRR2098823;SRR1555751;SRR2099428;SRR1556011;SRR2458631;SRR4407779;SRR4407954;SRR1556016;SRR4407962;SRR1298766;SRR1556018;SRR1654490;SRR1654491;SRR1300837
Length	21
Mature sequence(if miRNA)	1 - UCUGCGAGACGAAUUUUUUAA - 21
Stem-loop(if miRNA)	--UC                 A  C       AUCUAUAAUUAUGAAAA   UACUGUAGCAUC     UGCGAGACGAAUUUUUU AG CUAAUUA                 GUU            A     ||||||||||||||||| || |||||||                 |||            C     GCGCUCUGCUUAGAAAA UC GAUUAAU                 CGG            A UUAA                 C  A       ----------------G   UACUAAACUGUU
Stem-loop sequence	UCUGCGAGACGAAUUUUUUAAGCCUAAUUAAUCUAUAAUUAUGAAAAGUUUACUGUAGCAUCACAUUGUCAAAUCAUGGCGUAAUUAGACUCAAAAGAUUCGUCUCGCGAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242281.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   ||||||||||||||||||||| targets:1751   UUAAAAAAUUCGUCUCGCAGA   1771 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J075189D01, full insert sequence	NA	coding protein	psRNATarget
AK072161.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   ||||||=||||||||||||*| targets:1120   UUAAAAGAUUCGUCUCGCAAA   1140 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013132P06, full insert sequence	NA	coding protein	psRNATarget
AK289029.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   ||||||=||||||||||||*| targets:2223   UUAAAAGAUUCGUCUCGCAAA   2243 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090090O22, full insert sequence	NA	coding protein	psRNATarget
AK288184.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   ||||*|||||||||||||||* targets:958   UUAAUAAAUUCGUCUCGCAGU   978 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090005P17, full insert sequence	NA	coding protein	psRNATarget
CT837782.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   ||||*|||||||||||||||* targets:1525   UUAAUAAAUUCGUCUCGCAGU   1545 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
AK119775.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   ||||*|||||||||||||||* targets:839   UUAAUAAAUUCGUCUCGCAGU   859 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-172-G07, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   ||||*|||||||||||||||* targets:1761   UUAAUAAAUUCGUCUCGCAGU   1781 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AK288843.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   ||||*|||||||||||||||* targets:2214   UUAAUAAAUUCGUCUCGCAGU   2234 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090074J10, full insert sequence	NA	coding protein	psRNATarget
AK288471.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   ||||*|||||||||||||||* targets:1774   UUAAUAAAUUCGUCUCGCAGU   1794 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090037K14, full insert sequence	NA	coding protein	psRNATarget
XM_015780200.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   ||||*|||||||||||||||* targets:42   UUAAUAAAUUCGUCUCGCAGU   62 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g22150, chloroplastic (LOC4336891), mRNA	pentatricopeptide repeat-containing protein At3g22150, chloroplastic(LOC4336891)	coding protein	psRNATarget
XM_015769825.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   ||||*|||||||||||||||* targets:718   UUAAUAAAUUCGUCUCGCAGU   738 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
AK288216.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   ||||*|||||||||||||||* targets:723   UUAAUAAAUUCGUCUCGCAGU   743 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget
CT837862.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   *|||*|||||||||||||||* targets:907   CUAAUAAAUUCGUCUCGCAGU   927 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123J02, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   |*||||=||||||||||||*| targets:553   UCAAAAGAUUCGUCUCGCAAA   573 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK288230.1	ncRNA:21   AAUUUUUUAAGCAGAGCGUCU   1   |*||||=||||||||||||*| targets:5931   UGAAAAGAUUCGUCUCGCAAA   5951 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence	NA	coding protein	psRNATarget