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BaseInfo

ncRNA ID	novel_osa_miR3110
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:19527034-19527149 [-]
Reference genome	IRGSP-1.0
Source	SRR2040384
Length	21
Mature sequence(if miRNA)	1 - UCAUGAGUAAAUUGGUUCCCG - 21
Stem-loop(if miRNA)	--                      GG         G -  A   AUCAAC    UAGUC   GGAACCAAUUUACUCAUGAUAG  ACAAUAAGA A CC GGA      CCAC     A   ||||||||||||||||||||||  ||||||||| | || |||      ||||   CCUUGGUUAAAUGAGUACUAUC  UGUUGUUUU U GG CUU      GGUG     A GC                      UA         G A  -   AAUCAA    UUGAG
Stem-loop sequence	GGAACCAAUUUACUCAUGAUAGGGACAAUAAGAGACCAGGAAUCAACCCACUAGUCAAGAGUUGUGGAACUAAUUCGGAUGUUUUGUUGUAUCUAUCAUGAGUAAAUUGGUUCCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AM778050.1	ncRNA:21   GCCCUU--GGUUAAAUGAGUACU   1   |*||||--||||||||||||||| targets:848   CAGGAAGACCAAUUUACUCAUGA   870 Target Full Sequence	2.5	Oryza sativa Japonica Group partial mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar IRAT177	NA	coding protein	psRNATarget
AK099579.1	ncRNA:21   GCCCUU--GGUUAAAUGAGUACU   1   |*||||--||||||||||||||| targets:1399   CAGGAAGACCAAUUUACUCAUGA   1421 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039D24, full insert sequence	NA	coding protein	psRNATarget
AM778051.1	ncRNA:21   GCCCUU--GGUUAAAUGAGUACU   1   |*||||--||||||||||||||| targets:1212   CAGGAAGACCAAUUUACUCAUGA   1234 Target Full Sequence	2.5	Oryza sativa Indica Group partial mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Gigante	NA	coding protein	psRNATarget
AM778052.1	ncRNA:21   GCCCUU--GGUUAAAUGAGUACU   1   |*||||--||||||||||||||| targets:1240   CAGGAAGACCAAUUUACUCAUGA   1262 Target Full Sequence	2.5	Oryza sativa Indica Group partial mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Apura	NA	coding protein	psRNATarget
AK073908.1	ncRNA:21   GCCCUU--GGUUAAAUGAGUACU   1   |*||||--||||||||||||||| targets:1403   CAGGAAGACCAAUUUACUCAUGA   1425 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033075C23, full insert sequence	NA	coding protein	psRNATarget
AM778048.1	ncRNA:21   GCCCUU--GGUUAAAUGAGUACU   1   |*||||--||||||||||||||| targets:1817   CAGGAAGACCAAUUUACUCAUGA   1839 Target Full Sequence	2.5	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AM778049.1	ncRNA:21   GCCCUU--GGUUAAAUGAGUACU   1   |*||||--||||||||||||||| targets:1835   CAGGAAGACCAAUUUACUCAUGA   1857 Target Full Sequence	2.5	Oryza sativa Indica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar IR64	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:21   GCCCUU--GGUUAAAUGAGUACU   1   |*||||--||||||||||||||| targets:1818   CAGGAAGACCAAUUUACUCAUGA   1840 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget